View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14432_low_9 (Length: 311)
Name: NF14432_low_9
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_low_9 |
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| [»] scaffold0425 (2 HSPs) |
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| [»] scaffold1643 (1 HSPs) |
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| [»] scaffold0958 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 6932196 - 6932485
Alignment:
| Q |
1 |
ttcaagggacctaaatggaaaaattgttattattgtcgtaaaattcttcactgatgatctttatttcatcagagtcacaaacatgaagtttctagagaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
6932196 |
ttcaagggacctaaatggaaaaattgttattattgtcgtaaaattcttcactgatgatctttatttcatcag--tcataaacatgaagtttctagagaga |
6932293 |
T |
|
| Q |
101 |
gggcagttgccaaagtcatggcaaacgagaacataatccacaaccctttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttc |
200 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6932294 |
gggcagttgccaaagtcgtggcaaacaagaacataatccacaaccctttagccaacttggaaaacgattacctttgtagcgtttgatgttgagcttcttc |
6932393 |
T |
|
| Q |
201 |
aagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgtatctccacttcatatgtaactcttcta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932394 |
aagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgtatctccacttcatatgtaactcttcta |
6932485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6486427 - 6486125
Alignment:
| Q |
1 |
ttcaagggacctaaatggaaaaattgtt--attattgtcgtaaaattcttcactgatgatctttatttcatcagagtcacaaacatgaagtttctagaga |
98 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486427 |
ttcaagggacctaaatggaaaaattgttgaattattgtcgtaaaattcttcactgatgatctttatttcatcagagtcacaaacatgaagtttctagaga |
6486328 |
T |
|
| Q |
99 |
gagggcagttgccaaagtcatggcaaacgagaacataatccacaaccctttagcca---------acttggaaaacaattacctttgtagcgtttgatgt |
189 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
6486327 |
gagggcagttgccaaagtcgtggcaaacgagaacataatccacaaccctttagccaacttagccaacttggaaaacgattacctttgtagcgtttgatgt |
6486228 |
T |
|
| Q |
190 |
tgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgtatctccacttcatatgtaactctt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6486227 |
tgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgtaactccacttcatatgtaactctt |
6486128 |
T |
|
| Q |
290 |
cta |
292 |
Q |
| |
|
||| |
|
|
| T |
6486127 |
cta |
6486125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 292
Target Start/End: Complemental strand, 6840145 - 6840002
Alignment:
| Q |
148 |
ttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttc |
247 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| | ||||||| |
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| T |
6840145 |
ttagccaacttggaaagctattacctttgtagtgttttatgttgagcttctccaagttgctatttggttgaagagcctca-aagacatccgactctcttc |
6840047 |
T |
|
| Q |
248 |
cattggtattgaattcgtatctccacttcatatgtaactcttcta |
292 |
Q |
| |
|
|||||||||| |||| ||| ||||||| ||||| ||| ||||||| |
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| T |
6840046 |
cattggtattaaatttgtaactccactccatatttaattcttcta |
6840002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 7586679 - 7586803
Alignment:
| Q |
167 |
attacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgta |
266 |
Q |
| |
|
||||||||||||| || |||| | ||| |||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||| ||| |
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| T |
7586679 |
attacctttgtagtgtgagatgataagcctcttcaagctgctatttggttgaagagcctca-aagacatctgattctcttccattggtgttgaatttgta |
7586777 |
T |
|
| Q |
267 |
tctccacttcatatgtaactcttcta |
292 |
Q |
| |
|
||||||| ||||| ||| ||||||| |
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|
| T |
7586778 |
actccactccatatttaattcttcta |
7586803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 6795811 - 6795718
Alignment:
| Q |
198 |
ttcaagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaattcgtatctccacttcatatgtaactcttcta |
292 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||| | ||||||| ||| ||||||| ||||| ||| ||||||| |
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| T |
6795811 |
ttcaagttgctattcggttgaagagcctca-aagacatccaattctcttccattgttgttgaatttgtaactccactccatatttaattcttcta |
6795718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 6521382 - 6521307
Alignment:
| Q |
151 |
gccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
226 |
Q |
| |
|
||||| ||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
6521382 |
gccaatttggaaatctactacctttgtagcgtgtgatgttgagcttcttcaagttgctatttgattgtatagcctc |
6521307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 6528130 - 6528047
Alignment:
| Q |
143 |
accctttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
226 |
Q |
| |
|
|||| |||||||| ||||||| | | ||||||||||| || |||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
6528130 |
accccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttgtatagcctc |
6528047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 6734731 - 6734814
Alignment:
| Q |
143 |
accctttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
226 |
Q |
| |
|
|||| |||||||| ||||||| | | ||||||||||| || |||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
6734731 |
accccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttcaagttgctatttggttttagagcctc |
6734814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 6555699 - 6555613
Alignment:
| Q |
140 |
acaaccctttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
226 |
Q |
| |
|
||||||| |||||||| ||||||| | | ||||||||||| || | |||||||||||||||||||||||||||| || |||||||| |
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|
| T |
6555699 |
acaaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggttttagagcctc |
6555613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 8570159 - 8570095
Alignment:
| Q |
184 |
tgatgttgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttcca |
249 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||| || ||||||||||| |||||||||| |
|
|
| T |
8570159 |
tgatggtgagcctcttcaagttgctatttggttgaagagcatc-caagacatccacttctcttcca |
8570095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6840324 - 6840240
Alignment:
| Q |
1 |
ttcaagggacctaaatggaaaaattgtt--attattgtcgtaaaattcttcactgatgatctttatttcatcagagtcacaaaca |
83 |
Q |
| |
|
|||||| ||||||||||||| |||||| || ||||||||||| |||| | ||||||||||||||||||| ||||||||||| |
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|
| T |
6840324 |
ttcaagcgacctaaatggaacaattgtcgaatcgttgtcgtaaaactcttgatcgatgatctttatttcatcacagtcacaaaca |
6840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 6946096 - 6946139
Alignment:
| Q |
184 |
tgatgttgagcttcttcaagttgctatttgattgaagagcctca |
227 |
Q |
| |
|
||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
6946096 |
tgatggtgagcttcttcaagttgctctttggttgaagagcctca |
6946139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 8744 - 8661
Alignment:
| Q |
143 |
accctttagccaacttggaaaacaattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
226 |
Q |
| |
|
|||| |||||||| ||||||| | | |||||||||||| | |||||||||||||||||||||||||||||| ||| | |||||| |
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|
| T |
8744 |
accccttagccaatttggaaagctactacctttgtagcatgtgatgttgagcttcttcaagttgctatttggttgtaaagcctc |
8661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8927 - 8778
Alignment:
| Q |
1 |
ttcaagggacctaaatggaaaaattgtt--attattgtcgtaaaattcttcactgatgatctttatttcatcagagtcacaaacatgaagtttctagaga |
98 |
Q |
| |
|
|||||||||| | ||||||| ||||||| ||||||| | |||||||||||| |||||||||||| | ||| ||||| ||| |||||||| |||| |
|
|
| T |
8927 |
ttcaagggacttgaatggaacaattgttgaattattgccataaaattcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgaga |
8828 |
T |
|
| Q |
99 |
gagggcagttgccaaagtcatggcaaacgagaacataatccacaaccctt |
148 |
Q |
| |
|
|| || ||||| | |||| |||||||| |||||||| ||||||||||| |
|
|
| T |
8827 |
gaagggagttgtccaagtgctggcaaacaggaacataacccacaaccctt |
8778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 6574532 - 6574453
Alignment:
| Q |
182 |
tttgatgttgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttccattggtattgaatt |
262 |
Q |
| |
|
||||||| ||||| ||| | ||||||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
6574532 |
tttgatggtgagcctctgtaggttgctatttggtcgaagagcctca-aagacatccaattctcttccattgttattgaatt |
6574453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 1004 - 1062
Alignment:
| Q |
190 |
tgagcttcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttcca |
249 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||| || ||||||||||| |||||||||| |
|
|
| T |
1004 |
tgagcctcttcaagttgttatttggttgaagagcatc-caagacatccacttctcttcca |
1062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 1057 - 1005
Alignment:
| Q |
196 |
tcttcaagttgctatttgattgaagagcctcacaagacatccaattctcttcca |
249 |
Q |
| |
|
||||||||| |||||||| ||||||||| || ||||||||||| |||||||||| |
|
|
| T |
1057 |
tcttcaagtagctatttggttgaagagcatc-caagacatccacttctcttcca |
1005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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