View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_high_16 (Length: 272)
Name: NF14433_high_16
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_high_16 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 13444 - 13174
Alignment:
| Q |
1 |
gcctgcaatggaagatgctgcaagaagtggaaacttcgtgtgtttttcgaaacaaagtccacaaaaaagcgcttatgaaggtagcgtacgatcacaactg |
100 |
Q |
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| T |
13444 |
gcctgcaatggaagatgctgcaagaagtggaaacttcgtgtgtttttcgaaacgaagtccacaaaaaagcgcttatgaaggtagcgtacaatcacaactg |
13345 |
T |
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| Q |
101 |
aggaaaaaggaggatctgaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttg |
200 |
Q |
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| T |
13344 |
aggaaaaaggaggatctgaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttg |
13245 |
T |
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| Q |
201 |
aacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
271 |
Q |
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| T |
13244 |
aacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
13174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 7743 - 7590
Alignment:
| Q |
118 |
gaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacata |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||| || |||||||| |
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| T |
7743 |
gaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatc |
7644 |
T |
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| Q |
218 |
gaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
271 |
Q |
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| T |
7643 |
gaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
7590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 43879078 - 43879161
Alignment:
| Q |
160 |
gaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcg |
243 |
Q |
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|||||||||| || |||| |||| || ||||||||| ||||||| || ||||| |||||||||||||||||||| |||||||| |
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| T |
43879078 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcg |
43879161 |
T |
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