View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_high_2 (Length: 697)
Name: NF14433_high_2
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 40187115 - 40187521
Alignment:
| Q |
19 |
ggttatacattctcttaatcaacaagtctagccaactaattccacggttctgtttaagtaagaaagggaaaactcatttcacaatctgcaagtcttttga |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187115 |
ggttatacattctcttaatcaccaagtctagccaactaattccacggttctgtttaagtaagaaagggaaaactcatttcacaatctgcaagtcttttga |
40187214 |
T |
|
| Q |
119 |
attgctggtatctaagaactaccaagtgtgtgtgatggatatatagatagactcatgatatataattattctttctcccttaatgaattgagttaagttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187215 |
attgctggtatctaagaactaccaagtgtgtgtgatggatatatagatagactcatgatatataattattctttctcccttaatgaattgagttaagttt |
40187314 |
T |
|
| Q |
219 |
gagttttgagtaatgagctttgtgaggccgtctgcaacgtacaactttgtatttacatatccttagtcgcgatggatgccatgtcagagttgggggttcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40187315 |
gagttttgagtaatgagctttgtgaggccgtctgcaacgtacaactttgtatttacatatccttagtcacgatggatgccatgtcagagttgggggttcc |
40187414 |
T |
|
| Q |
319 |
ttcgatggccaggtcttcacaaattctcaagacttcttgtggttttccttctttggtctaccttctcccaattctgttacataccttcttttatgtaccc |
418 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187415 |
ttcgatggccaggtcttcacgaattctcaagacttcttgtggttttccttctttggtctaccttctcccaattctgttacataccttcttttatgtaccc |
40187514 |
T |
|
| Q |
419 |
taccctt |
425 |
Q |
| |
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||||||| |
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| T |
40187515 |
taccctt |
40187521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 422 - 690
Target Start/End: Original strand, 40187600 - 40187874
Alignment:
| Q |
422 |
cctttatgcatgatcttacatttgaagaatattccataatcataaattacaggtcaatgacatgcaattttatagtttccaatttcccttcttggcataa |
521 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187600 |
cctttatgcatgatcttacatttaaagaatattccataatcataaattacaggtcaatgacatgcaattttatagtttccaatttcccttcttggcataa |
40187699 |
T |
|
| Q |
522 |
tgat------aggttgtgtctagactttttatattcaaatatattttcacttttctgcctagtttaccaattccaaacataatggattttaaaaatttca |
615 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187700 |
tgatattgataggttgtgtctagactttttatattcaaatatattttcacttttctgcctagtttaccaattccaaacataatggattttaaaaatttca |
40187799 |
T |
|
| Q |
616 |
ttatagggttttatgacatcatttgattcatgtagttggttgcacgtaataaaaaacattgactgttgttctgtg |
690 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187800 |
ttatagggtcttatgacatcatttgattcatgtagttggttgcacgtaataaaaaacattgactgttgttctgtg |
40187874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 1387779 - 1387982
Alignment:
| Q |
21 |
ttatacattctcttaatcaacaagtctagccaactaattccacggttctgtttaagtaagaaagggaaaactcatttcacaatctgcaagtcttttgaat |
120 |
Q |
| |
|
|||| |||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
1387779 |
ttatgcattctcttaattaccaagtctaaccaactaattctacggttctgtttaagtaagaaagggaaaactcatttcata--ctgcaagtcttt-gaat |
1387875 |
T |
|
| Q |
121 |
tgctggtatctaagaactaccaagtgtgtgtgatggatatatagatagactcatgatatataattattctttctcccttaatgaattgagttaagtttga |
220 |
Q |
| |
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||||| |||||| |||||||||||||| |||||| |||||||||| | || ||| ||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
1387876 |
tgctgttatctaggaactaccaagtgtatgtgatagatatatagacaaacaaatgttatataattattctttctctcataattaattgagttaagtttga |
1387975 |
T |
|
| Q |
221 |
gttttga |
227 |
Q |
| |
|
||||||| |
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|
| T |
1387976 |
gttttga |
1387982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 209 - 425
Target Start/End: Original strand, 40186047 - 40186266
Alignment:
| Q |
209 |
agttaagtttgagttttgagtaatgagctttgtgaggccgtctgcaacgtacaactttgtatttacatatccttagtcgcgatggatgccatgtcagagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||| | |||||| ||| | |||| ||||||| || ||||||||||||||||||||| |
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| T |
40186047 |
agttaagtttgagttttgagtaatgagcttcttgaggccatctgcgatgtacaattttttgattacttatccttcatcacgatggatgccatgtcagagt |
40186146 |
T |
|
| Q |
309 |
tgggggttccttcgatggccaggtcttcacaaattctcaagacttcttgtggttttccttctttggtctaccttctcccaattctgttacatac---ctt |
405 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||| || ||||| ||||||||||||||||||||||| |||| || |||| ||| |
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| T |
40186147 |
tgggggttccttcgatggccaggtcttgaaggtttcttaagacttctcgtcgtttttcttctttggtctaccttctcccatctctgctatataccttctt |
40186246 |
T |
|
| Q |
406 |
cttttatgtaccctaccctt |
425 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
40186247 |
cttctatgtaccctaccctt |
40186266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 592
Target Start/End: Original strand, 40186478 - 40186550
Alignment:
| Q |
522 |
tgataggttgtgtctagactttttatat--tcaaatatattttcacttttctgcctagtttaccaattccaaa |
592 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
40186478 |
tgataggttgtatctagactttttatatattaaaatacattttcacttttcaacctactttaccaattccaaa |
40186550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 651
Target Start/End: Original strand, 40186882 - 40186919
Alignment:
| Q |
614 |
cattatagggttttatgacatcatttgattcatgtagt |
651 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40186882 |
cattataggattttatgacatcatttgattcatgtagt |
40186919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 26945063 - 26944860
Alignment:
| Q |
21 |
ttatacattctcttaatcaacaagtctagccaactaattccacggttctgtttaagtaagaaagggaaaactcatttcacaatctgcaagtcttttgaat |
120 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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|
| T |
26945063 |
ttatgcattctcttaatcaccaagtctagccaactaattccacggttctgtttaagtaagaaagggaaaactcatttccta--ctgcaagtcttt-gaat |
26944967 |
T |
|
| Q |
121 |
tgctggtatctaagaactaccaagtgtgtgtgatggatatatagatagactcatgatatataattattctttctcccttaatgaattgagttaagtttga |
220 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
26944966 |
tgctgctatctaggaactaccaagtgtgtgtgatggatatatagacaaactcatgttatataattattctttctctcataattaattgagttaagtttga |
26944867 |
T |
|
| Q |
221 |
gttttga |
227 |
Q |
| |
|
||||||| |
|
|
| T |
26944866 |
gttttga |
26944860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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