View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_high_21 (Length: 218)
Name: NF14433_high_21
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_high_21 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 43464515 - 43464727
Alignment:
| Q |
3 |
ctaactttaacattgaatttttcttcctttggaaaattatatacaatcttgaattttgtttctctttnnnnnnnnnngcttagtcattagctatttttat |
102 |
Q |
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| T |
43464515 |
ctaactttaacattgaatttttcttcctttggaaaattatatacaatcttgaattttgtttctctttaaaaaaa---gcttagtcattagctattattat |
43464611 |
T |
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| Q |
103 |
gtaaaaagttgatatgtctacttcatagattttcccttgttatgtaaactactaggaaacatcatcttggcaattgccttttgaatttcgacttggtgac |
202 |
Q |
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| T |
43464612 |
gtaaaaagttgatatgtctacttcatagattttcccttgttatgtaaactactaggaaacatcatcttggcaattgccttttgaatttcgacttggtgac |
43464711 |
T |
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| Q |
203 |
atctaaatttaagcta |
218 |
Q |
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| T |
43464712 |
atctaaatttaagcta |
43464727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 43456394 - 43456473
Alignment:
| Q |
140 |
tgttatgtaaactacta--ggaaacatcatcttggcaattgccttttgaatttcgacttggtgacatctaaatttaagcta |
218 |
Q |
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| T |
43456394 |
tgttatgtaaattactataggaaacattatcttgtcaactgccttt-gagtttcgacttggtgacatctaaatttaagcta |
43456473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 43456298 - 43456331
Alignment:
| Q |
8 |
tttaacattgaatttttcttcctttggaaaatta |
41 |
Q |
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| T |
43456298 |
tttaacattgaatttttcttcctttagaaaatta |
43456331 |
T |
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