View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_high_22 (Length: 215)
Name: NF14433_high_22
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 26914789 - 26914583
Alignment:
| Q |
1 |
cccataatccattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgc |
100 |
Q |
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| T |
26914789 |
cccataatccattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgc |
26914690 |
T |
|
| Q |
101 |
aaaaatccagtatcaaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaatagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914689 |
aaaaatccagtatcaaatcaaagggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaatagg |
26914590 |
T |
|
| Q |
201 |
tgagtat |
207 |
Q |
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||||||| |
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| T |
26914589 |
tgagtat |
26914583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 51182519 - 51182329
Alignment:
| Q |
15 |
tcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51182519 |
tcattcttggctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataattattttagtggagttgctgcaaaaatccagtatc |
51182421 |
T |
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| Q |
115 |
aaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagta |
206 |
Q |
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|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
51182420 |
aaatcaaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgagta |
51182329 |
T |
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