View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14433_high_6 (Length: 436)

Name: NF14433_high_6
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14433_high_6
NF14433_high_6
[»] chr3 (20 HSPs)
chr3 (1-434)||(22356733-22357172)
chr3 (39-405)||(22366711-22367077)
chr3 (47-407)||(22629238-22629598)
chr3 (39-405)||(22441532-22441898)
chr3 (32-335)||(22634238-22634541)
chr3 (63-405)||(22435442-22435784)
chr3 (47-405)||(22466743-22467101)
chr3 (40-405)||(22352598-22352964)
chr3 (96-333)||(37929600-37929837)
chr3 (47-331)||(22457305-22457577)
chr3 (47-331)||(22480286-22480558)
chr3 (39-158)||(22430000-22430119)
chr3 (348-405)||(22634602-22634659)
chr3 (320-405)||(22430235-22430320)
chr3 (353-405)||(37929960-37930012)
chr3 (222-272)||(22430163-22430213)
chr3 (225-276)||(30988275-30988326)
chr3 (356-405)||(22614366-22614415)
chr3 (362-409)||(30988406-30988453)
chr3 (46-87)||(22054324-22054365)
[»] chr4 (2 HSPs)
chr4 (222-332)||(29604401-29604511)
chr4 (358-400)||(29604531-29604573)
[»] chr1 (1 HSPs)
chr1 (293-325)||(34976785-34976817)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 22356733 - 22357172
Alignment:
Q  1 caagatcaatgaatgcgccatatcccattccgattcc------tctaatatttagtttctccaatttttgcatctcattgattgaggaagatatagcact 94  Q
    |||||||||||||||||||||||||||||||||||||      | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22356733 caagatcaatgaatgcgccatatcccattccgattccgactcctttaatacttagtttctccaatttttgcatctcattgattgaggaagatataccact 22356832  T
Q  95 catatatttactcttaacaccggtcaagctcaattccctaagctgctttagttttcccagctcttctattaactctacaactctattatcattttcatct 194  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22356833 catatatttactcttaagaccgctcaagctcaattccctaagctgctttagttttcccagctcttctattaactctacaactctattatcattttcatct 22356932  T
Q  195 tcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaat 294  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22356933 tcataatcatctaaataaacactatttagagtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaat 22357032  T
Q  295 ggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22357033 ggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaat 22357132  T
Q  395 ggattttggaatttttggaaatataggatatgtttctcca 434  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22357133 ggattttggaatttttggaaatataggatatgtttctcca 22357172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 39 - 405
Target Start/End: Original strand, 22366711 - 22367077
Alignment:
Q  39 ctaatatttagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagct 138  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  22366711 ctaatatttagtttctccagttgttgcatcttattgattgaagaagatatagcactcatatatttactcctaacaccggccaagcccaattcccttagct 22366810  T
Q  139 gctttagttttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgt 238  Q
    ||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||| ||||| |||| ||||   ||| ||||||||||| |||||    
T  22366811 gctttagttttcctagctcttcaattagctctacgactctattatcattttcatcttcatgatcatataaataaacctcatttagagtttgtagggatgt 22366910  T
Q  239 catgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattagga 338  Q
    |||||||||||||||||||||||||| |||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22366911 catgcctccaataccatccttcaactcaatcaaagacatacgatagcctaaaaaatggcgtagctttctaagcttgcaaatctccttcggcatattacga 22367010  T
Q  339 tgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    | || ||| | ||    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22367011 tttttaaactctgtttctcttaaatccaaagtctctaggttcacaagcatgccaatggattttggaa 22367077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 47 - 407
Target Start/End: Original strand, 22629238 - 22629598
Alignment:
Q  47 tagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctgctttagt 146  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  ||||  ||||||||| ||||| |||||     
T  22629238 tagtttctccaattgttgcatcttattgattgaggaagatatagcactcatatatttactcctaacaccgagcaagaccaattcccttagctgatttagc 22629337  T
Q  147 tttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctc 246  Q
    ||||| || ||||| |||| |||||| ||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||| |||||||||||||    
T  22629338 tttcctagatcttcgattagctctaccactctattatcattttcatcttccttatcatctaaacaaacactatttagagtttgtagggatgtcatgcctc 22629437  T
Q  247 caataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaa 346  Q
    |||||| ||||||||||| |||||||||||||    ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||      
T  22629438 caatactatccttcaactcaatcaaagacatacgaatgcctaaaaaatggcgtagctttctaagcatgcaaatctcctttggcatattacgattttcagt 22629537  T
Q  347 ttttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaatt 407  Q
      ||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22629538 cattctatgtcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaatt 22629598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 39 - 405
Target Start/End: Original strand, 22441532 - 22441898
Alignment:
Q  39 ctaatatttagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagct 138  Q
    |||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||    
T  22441532 ctaataattagtttctccaattgttgcatctcgttgattgagaaagatatagcactcatatatttactcctaacaccggtcaagcccaatttccttagct 22441631  T
Q  139 gctttagttttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgt 238  Q
    | ||||| ||||| |||||||  |||| |||||||||||||||||||||||||  ||||  ||||| |||    || | | | ||||||||||| |||||    
T  22441632 gttttagctttcctagctcttggattagctctacaactctattatcattttcacgttcactatcatttaagtgtactccacttagagtttgtagggatgt 22441731  T
Q  239 catgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattagga 338  Q
    |||||||||||||||||||||||||| |||||||||||||   | |||||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  22441732 catgcctccaataccatccttcaactcaatcaaagacatacgatagcctaaaaaatggcgtagctttctaagcttgcaaatctccttcggcatattatca 22441831  T
Q  339 tgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    | | |||| | || |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22441832 tttacaaaatatgtatctcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 22441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 22634238 - 22634541
Alignment:
Q  32 gattcctctaatatttagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattcc 131  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||||    
T  22634238 gattcctctaatatttagtttctccaattgttgcatcttgttgattgaggaagatatagcactcatatatttactcctaacaccgaccaagcttaattcc 22634337  T
Q  132 ctaagctgctttagttttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgta 231  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||| ||||   ||| ||||||||||    
T  22634338 ctaagctgctttagctttcctagctcttctattaactctaccactctattatcatcttcatcttcatcatcgtctaaataaacctcatttagagtttgta 22634437  T
Q  232 gcgatgtcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcat 331  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||    | |||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  22634438 gggatgtcatgcctccaataccatccttcaactgaatcagagacatttgatagcctataaaatggcgtagctttttaagcttgcaaatctccttgggcat 22634537  T
Q  332 atta 335  Q
    ||||    
T  22634538 atta 22634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 63 - 405
Target Start/End: Original strand, 22435442 - 22435784
Alignment:
Q  63 tgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctgctttagttttcccagctcttcta 162  Q
    ||||||| |||||||||||||||||||||||||||||||||||   ||||| |   ||||| |||||||||||||||  |||| ||||| ||||||   |    
T  22435442 tgcatcttattgattgaggaagatatagcactcatatatttaccactaacaacaaccaagcccaattccctaagctgtgttagctttcctagctctatga 22435541  T
Q  163 ttaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctccaataccatccttcaa 262  Q
    ||| |||||| || |||||||||||||||||||||  |||||||||   |||  || | |||||||||||||||||||||||||||||||||||||||||    
T  22435542 ttagctctactaccctattatcattttcatcttcaccatcatctaatttaactttacttagagtttgtagcgatgtcatgcctccaataccatccttcaa 22435641  T
Q  263 ctgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaattttggagatcttaaa 362  Q
     ||||||||||||| | | | |||||| ||||| |||||||||||||||||||||| |||||| ||||||||| ||| |||||| | || ||||||||||    
T  22435642 atgaatcaaagacagagaatcgcctaaaaaatgacgtagctttctaagcttgcaaacctcctttggcatattacgattttcaaactctgtagatcttaaa 22435741  T
Q  363 tccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22435742 tccaaagtctctaggttcacgagcatgccaatggattttggaa 22435784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 47 - 405
Target Start/End: Original strand, 22466743 - 22467101
Alignment:
Q  47 tagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctgctttagt 146  Q
    ||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||  || | ||  |||||     
T  22466743 tagtttctccatttgttgcatttgattgattgaggaagatatagcactcatatatttactcctaacacctatcaagctcaattttcttatcttatttagc 22466842  T
Q  147 tttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctc 246  Q
    ||||| |||||||  |||| |||||| |||||||||||||||||||||||||  ||||||||| ||||   | | ||||||||||| |||||||||||||    
T  22466843 tttcctagctcttgaattagctctactactctattatcattttcatcttcattctcatctaaataaacttcacttagagtttgtagagatgtcatgcctc 22466942  T
Q  247 caataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaa 346  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||  |||| |    
T  22466943 caataccatccttcaactgaatcaaagacatacaatcgcctaataaatggcgtagctttctaagcttgcaaatctcctttggcatatcacgaatttcata 22467042  T
Q  347 ttttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
     ||   | ||||||||||||||||||||| |||  ||| ||||||||||||||||||||    
T  22467043 attgctatatcttaaatccaaagtctctaagtttgcgatcatgccaatggattttggaa 22467101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 40 - 405
Target Start/End: Original strand, 22352598 - 22352964
Alignment:
Q  40 taatatttagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctg 139  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||  ||||  ||| ||||| |||||    
T  22352598 taatatatagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacaccgtacaagaccaactcccttagctg 22352697  T
Q  140 ctttagttttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagag-tttgtagcgatgt 238  Q
     ||||| ||||| |||||||| |||| ||||||||||||| | ||||||||||||||    ||||||||| |||||  | | |||| ||||||| |||||    
T  22352698 atttagctttcctagctcttcaattagctctacaactctactgtcattttcatcttctccttcatctaaataaacatcacttagagttttgtagggatgt 22352797  T
Q  239 catgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattagga 338  Q
    |||||||||||||||||| ||||| ||||||||||||||   ||||||||| |||||||||| ||||||||||||||||||||||||   ||||||| |     
T  22352798 catgcctccaataccatctttcaattgaatcaaagacatttggttgcctaaaaaatggcgtaactttctaagcttgcaaatctcctttaacatattacgc 22352897  T
Q  339 tgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
      | | ||   || |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22352898 aatgcgaacagtgcaactcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 22352964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 96 - 333
Target Start/End: Original strand, 37929600 - 37929837
Alignment:
Q  96 atatatttactcttaacaccggtcaagctcaattccctaagctgctttagttttcccagctcttctattaactctacaactctattatcattttcatctt 195  Q
    |||||||||||| ||||||||| ||||| ||||||||| ||||| ||||| ||||| |||||||  |||| |||||||||||||||||||||||||||||    
T  37929600 atatatttactcctaacaccggccaagcccaattcccttagctgttttagctttcctagctcttggattagctctacaactctattatcattttcatctt 37929699  T
Q  196 cataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatg 295  Q
    ||| |||||||||| | ||   ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||      |||||| |||      
T  37929700 catcatcatctaaatatacttcatttagagtttgtagggatgtcaggcctccaataccatccttcaactgaatcaaagacatttcagagcctaaaaaaca 37929799  T
Q  296 gcgtagctttctaagcttgcaaatctccttcggcatat 333  Q
     |||||||||||||||||||||||||||||||||||||    
T  37929800 acgtagctttctaagcttgcaaatctccttcggcatat 37929837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 331
Target Start/End: Original strand, 22457305 - 22457577
Alignment:
Q  47 tagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctgctttagt 146  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||   ||| |||||||| |||||  ||||||||| || |||||||||    
T  22457305 tagtttctccactttttgcatctcattgattgaggaagatatagcactcatgtatccgctcctaacaccgatcaagaccaattcccttaggtgctttagt 22457404  T
Q  147 tttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctc 246  Q
    ||||| |||||||  |||| || ||| |||      ||||||||  |        |||||||| |||||  |   ||||||||||| |||||||||||||    
T  22457405 tttcctagctcttggattagctttaccact------tcattttcgcc------gccatctaaataaacatcacgtagagtttgtagggatgtcatgcctc 22457492  T
Q  247 caataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcat 331  Q
    | |||||||| || || |||||||||||||||  || |||||  |||||||||| ||||||||||||||| ||||| ||||||||    
T  22457493 cgataccatcttttaattgaatcaaagacatattgtagcctaggaaatggcgtaactttctaagcttgcatatctctttcggcat 22457577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 331
Target Start/End: Original strand, 22480286 - 22480558
Alignment:
Q  47 tagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagctgctttagt 146  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||   ||| |||||||| |||||  ||||||||| || |||||||||    
T  22480286 tagtttctccactttttgcatctcattgattgaggaagatatagcactcatgtatccgctcctaacaccgatcaagaccaattcccttaggtgctttagt 22480385  T
Q  147 tttcccagctcttctattaactctacaactctattatcattttcatcttcataatcatctaaagaaacactattgagagtttgtagcgatgtcatgcctc 246  Q
    ||||| |||||||  |||| || ||| |||      ||||||||  |        |||||||| |||||  |   ||||||||||| |||||||||||||    
T  22480386 tttcctagctcttggattagctttaccact------tcattttcgcc------gccatctaaataaacatcacgtagagtttgtagggatgtcatgcctc 22480473  T
Q  247 caataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcat 331  Q
    | |||||||| || || |||||||||||||||  || |||||  |||||||||| ||||||||||||||| ||||| ||||||||    
T  22480474 cgataccatcttttaattgaatcaaagacatattgtagcctaggaaatggcgtaactttctaagcttgcatatctctttcggcat 22480558  T

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Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 22430000 - 22430119
Alignment:
Q  39 ctaatatttagtttctccaatttttgcatctcattgattgaggaagatatagcactcatatatttactcttaacaccggtcaagctcaattccctaagct 138  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||| ||| |||||||||||||||||||  |||||||| ||||| ||||||||| ||||    
T  22430000 ctaatatttagtttctccaattcgtgcatctgattgattgaggaacataaagcactcatatatttactccaaacaccggccaagcccaattcccttagct 22430099  T
Q  139 gctttagttttcccagctct 158  Q
    | ||||| ||||| ||||||    
T  22430100 gatttagctttcctagctct 22430119  T

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Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 22634602 - 22634659
Alignment:
Q  348 tttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22634602 tttggagattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 22634659  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 22430235 - 22430320
Alignment:
Q  320 ctccttcggcatattaggatgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    ||||| |||||||||| ||| ||||||  ||  | |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22430235 ctcctgcggcatattatgattttcaaaccttatatatcttaaatccaaagtctctaggttcactagcatgccaatggattttggaa 22430320  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 37929960 - 37930012
Alignment:
Q  353 agatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929960 agattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 37930012  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 22430163 - 22430213
Alignment:
Q  222 agagtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaa 272  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  22430163 agagtttgtagggatgtcatgcctccaataccatccttcaattcaatcaaa 22430213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 30988275 - 30988326
Alignment:
Q  225 gtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaagaca 276  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  30988275 gtttgtagggatgtcatctctccaataccatcctttaactgaatcaaagaca 30988326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 22614366 - 22614415
Alignment:
Q  356 tcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaa 405  Q
    ||||| ||||||||||||||||||   |||||||||||||||||||||||    
T  22614366 tcttacatccaaagtctctaggttttggagcatgccaatggattttggaa 22614415  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 30988406 - 30988453
Alignment:
Q  362 atccaaagtctctaggttcacgagcatgccaatggattttggaatttt 409  Q
    |||||| ||||||||||||  ||||||||||||||||||||| |||||    
T  30988406 atccaaggtctctaggttctggagcatgccaatggattttgggatttt 30988453  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 22054365 - 22054324
Alignment:
Q  46 ttagtttctccaatttttgcatctcattgattgaggaagata 87  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  22054365 ttagtttctccaagttttgcatttcgttgattgaggaagata 22054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 29604401 - 29604511
Alignment:
Q  222 agagtttgtagcgatgtcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatct 321  Q
    |||||||||||  ||||||||||||||| |||||||||||| |||||| ||||||||     |||||  |||||||| ||||||||||||||||||||||    
T  29604401 agagtttgtaggaatgtcatgcctccaagaccatccttcaattgaatccaagacatactcaagcctagaaaatggcgcagctttctaagcttgcaaatct 29604500  T
Q  322 ccttcggcata 332  Q
    |||||||||||    
T  29604501 ccttcggcata 29604511  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 29604531 - 29604573
Alignment:
Q  358 ttaaatccaaagtctctaggttcacgagcatgccaatggattt 400  Q
    |||||||||| |||||||||||| ||||||||| |||||||||    
T  29604531 ttaaatccaaggtctctaggttctcgagcatgcaaatggattt 29604573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 34976817 - 34976785
Alignment:
Q  293 atggcgtagctttctaagcttgcaaatctcctt 325  Q
    ||||||||||||||||||||||| |||||||||    
T  34976817 atggcgtagctttctaagcttgctaatctcctt 34976785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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