View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_10 (Length: 376)
Name: NF14433_low_10
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 36522757 - 36523095
Alignment:
| Q |
18 |
cacctatgtggaaaacaagctcaaagtcaccttctatggcaactcatcatcatcatgctatgaaaaacacagctttgcattcttcacgtactggattacc |
117 |
Q |
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| T |
36522757 |
cacctatgtggaaaacaagctcaaagtcaccttctatggcaactcatcatcaccatgctatgaaaaagacagctttgcattcttcacgtactggattacc |
36522856 |
T |
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| Q |
118 |
cttcaaagagaagaaagaaatttctgtgtctgctagaaaacttgctgctacactttgggaaatcaatgatttaactccttcaaggatcaagaaggaatca |
217 |
Q |
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| T |
36522857 |
cttcaaagagaagaaagaaatttctgtgtctgctagaaaacttgctgctacactttgggaaatcaatgatttaactccttcaaggatcaagaaggaatca |
36522956 |
T |
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| Q |
218 |
atgaaaagcaataaggaaagagacaaagttgagaggttatgtagatcagtgttgttgggaccacaaaagttagatccattggttagtcctttctcagagg |
317 |
Q |
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| T |
36522957 |
atgaaaagcaataaggaaagagacaaagttgagaggttatgtagatcagtgttgttgggaccacaaaagttagatccattggttagtcctttctcagagg |
36523056 |
T |
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| Q |
318 |
taaattactaaattcatatagaagttttgtagattttat |
356 |
Q |
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| T |
36523057 |
taaattactaaattcatatagaagttttgtagattttat |
36523095 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 18973037 - 18972960
Alignment:
| Q |
138 |
tttctgtgtctgctagaaaacttgctgctacactttgggaaatcaatgatttaactccttcaaggatcaagaaggaat |
215 |
Q |
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| T |
18973037 |
tttctgtttcagctagaaaacttgctgcttctttgtgggaaatcaatgatttgcatccttcaagggtcaagaaggaat |
18972960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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