View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14433_low_12 (Length: 338)

Name: NF14433_low_12
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14433_low_12
NF14433_low_12
[»] chr3 (2 HSPs)
chr3 (185-338)||(1310237-1310392)
chr3 (45-86)||(19932296-19932337)
[»] chr8 (3 HSPs)
chr8 (78-228)||(44667629-44667781)
chr8 (9-86)||(5538436-5538515)
chr8 (107-228)||(6816851-6816978)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-86)||(8966-9041)
[»] chr7 (3 HSPs)
chr7 (9-86)||(16420254-16420329)
chr7 (80-172)||(28382724-28382816)
chr7 (78-172)||(28387076-28387170)
[»] chr6 (1 HSPs)
chr6 (107-228)||(34518754-34518880)
[»] chr4 (1 HSPs)
chr4 (78-191)||(28657501-28657613)
[»] chr2 (1 HSPs)
chr2 (90-178)||(2037938-2038026)
[»] chr5 (1 HSPs)
chr5 (16-58)||(37940550-37940592)
[»] chr1 (4 HSPs)
chr1 (16-58)||(18901445-18901487)
chr1 (45-86)||(18901508-18901549)
chr1 (16-49)||(51784859-51784892)
chr1 (45-84)||(51784794-51784833)
[»] scaffold0004 (1 HSPs)
scaffold0004 (173-228)||(189050-189106)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 185 - 338
Target Start/End: Original strand, 1310237 - 1310392
Alignment:
Q  185 attataataacggttcctagtc-ttttcacacacatcca-ttctattctgcgaacaagaaatacgtagagagaaagagaatggagagggagtctgacgga 282  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1310237 attataataacggttcctagtccttttcacacacatccacttctattctgcgaacaagaaatacatagagagaaagagaatggagagggagtctgacgga 1310336  T
Q  283 ggaagagatagaacaaacattcaccccaaagagacaagtaagaagtatttcaacct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1310337 ggaagagatagaacaaacattcaccccaaagagacaagtaagaagtatttcaacct 1310392  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 19932296 - 19932337
Alignment:
Q  45 tatttattagagtaatatataataagatcagcaagaaagtag 86  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  19932296 tatttattaaagtaatatataataagattagcaataaagtag 19932337  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 44667629 - 44667781
Alignment:
Q  78 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 177  Q
    ||||||||| | |||||||||||||||| || ||||  ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||     
T  44667629 agaaagtaggagatacaacttcttccctgtttatatgaccatgacacaccactttccactccatgatttagttccacatttttaggaagagagttagtgg 44667728  T
Q  178 gagagttattataataa-cggttcctagtc-ttttcacacacatccattctat 228  Q
    ||||||||||| ||||| ||||||||| || ||||||||||||  ||||||||    
T  44667729 gagagttattagaataaccggttcctattcattttcacacacactcattctat 44667781  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 5538515 - 5538436
Alignment:
Q  9 gtcgaagaatatgtgccactagatattactagctagtatttattagagtaata--tataataagatcagcaagaaagtag 86  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtag 5538436  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 6816851 - 6816978
Alignment:
Q  107 ttcatatacccatgacaccccactttccactccatgatttagtcccacgttttt----aggaagaaagttagtgagagagttattataataa-cggttcc 201  Q
    |||||||  ||||||||| |||||||||||||||||| ||||| |||| |||||    ||||||  ||| |||||||||||||| ||||||| ||||||     
T  6816851 ttcatatgaccatgacacaccactttccactccatgaattagttccacatttttagcaaggaaggtagtgagtgagagagttataataataaccggttct 6816950  T
Q  202 tagtc-ttttcacacacatccattctat 228  Q
    || || |||| ||||||| |||||||||    
T  6816951 tattctttttaacacacacccattctat 6816978  T

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Target: scaffold0003 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 8966 - 9041
Alignment:
Q  9 gtcgaagaatatgtgccactagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 9041  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 16420254 - 16420329
Alignment:
Q  9 gtcgaagaatatgtgccactagatattactagctagtatttattagagtaatatataataagatcagcaagaaagtag 86  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagta--atataataagattagcaagaaagtag 16420329  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 28382724 - 28382816
Alignment:
Q  80 aaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 172  Q
    ||||||| | |||||||||||||||| |||||||  || |||||| |||||||||||||||||||||||| ||||  |||||||||| |||||    
T  28382724 aaagtaggagatacaacttcttccctgttcatatgaccgtgacacaccactttccactccatgatttagttccactattttaggaaggaagtt 28382816  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 28387076 - 28387170
Alignment:
Q  78 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt 172  Q
    ||||||||||| |||||||||||||| |||||||||  || ||||||  ||||||||||||||||||||||| |||   |||||||||| |||||    
T  28387076 agaaagtagtagatacaacttcttccttattcatatgaccgtgacacatcactttccactccatgatttagttccattattttaggaaggaagtt 28387170  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 34518880 - 34518754
Alignment:
Q  107 ttcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagtt----agtgagagagttattataataacggttcct 202  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||||    ||||| ||||||||||||||||||||||||    
T  34518880 ttcatatgaccatgacacaccactttccactccatgatttagttccacatttttagcaaggaagttagcgagtgaaagagttattataataacggttcct 34518781  T
Q  203 agtc-ttttcacacacatccattctat 228  Q
    | || |||||||||| | |||||||||    
T  34518780 attctttttcacacatacccattctat 34518754  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 28657613 - 28657501
Alignment:
Q  78 agaaagtagtaaatacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtga 177  Q
    ||||||||| | ||||| |||||||| |||||||||  ||| ||||| |||||||||||||||||||||||| |||| ||||||||||  ||||||  ||    
T  28657613 agaaagtaggagatacagcttcttccttattcatatgaccacgacacaccactttccactccatgatttagttccacttttttaggaaagaagtta-cga 28657515  T
Q  178 gagagttattataa 191  Q
    ||||||||||||||    
T  28657514 gagagttattataa 28657501  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 2037938 - 2038026
Alignment:
Q  90 atacaacttcttccctattcatatacccatgacaccccactttccactccatgatttagtcccacgtttttaggaagaaagttagtgag 178  Q
    |||||||||||||| | |||||||   |||||||| ||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||    
T  2037938 atacaacttcttccatgttcatatgatcatgacacaccactttccaccccatgatttagttccacatttttagcaaggaagttagtgag 2038026  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
Q  16 aatatgtgccactagatattactagctagtatttattagagta 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37940592 aatatgtgccactagatattactagctagtatttattagagta 37940550  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
Q  16 aatatgtgccactagatattactagctagtatttattagagta 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  18901445 aatatgtgacactagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 18901508 - 18901549
Alignment:
Q  45 tatttattagagtaatatataataagatcagcaagaaagtag 86  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  18901508 tatttattaaagtaatatataataagattagcaagaaagtag 18901549  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
Q  16 aatatgtgccactagatattactagctagtattt 49  Q
    ||||||||||||||||||||||||||||||||||    
T  51784892 aatatgtgccactagatattactagctagtattt 51784859  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
Q  45 tatttattagagtaatatataataagatcagcaagaaagt 84  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  51784833 tatttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 189106 - 189050
Alignment:
Q  173 agtgagagagttattataataacggttcctagt-cttttcacacacatccattctat 228  Q
    |||||||||||||||||||||| |||||||| |  |||||||||| | |||||||||    
T  189106 agtgagagagttattataataatggttcctattgtttttcacacatacccattctat 189050  T

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