View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14433_low_13 (Length: 336)
Name: NF14433_low_13
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 32528740 - 32528420
Alignment:
| Q |
1 |
gatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaatgctattcattgttcttgctcgttagagcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32528740 |
gatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaatgctattcattgttcttgctcgttagagcgta |
32528641 |
T |
|
| Q |
101 |
ctacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttatttattggaaaaatgagtatgcatgaatgaaatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32528640 |
ctacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttatttattggaaaaatgagtatgcataaatgaaatga |
32528541 |
T |
|
| Q |
201 |
tgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatccaatgaaagactttcattagagaaaaacacgagtatatac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
32528540 |
tgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatcctattcaagactttcattagagaaaaacacgagtatatac |
32528441 |
T |
|
| Q |
301 |
tatatactagttccaacaact |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32528440 |
tatatactagttccaacaact |
32528420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University