View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_14 (Length: 332)
Name: NF14433_low_14
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 1785297 - 1785622
Alignment:
| Q |
2 |
atagatgtggtgtctctttgtgacttgatttaatcctttgttgctctcactgctccctagactcttcaacaacttttcaattatataatttttccaagat |
101 |
Q |
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| T |
1785297 |
atagatgtggtgtctctttgtgatttgatttaatcctttgttgctctcactgctccctagactcttcaacaacttttcaattatataatttttccaagat |
1785396 |
T |
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| Q |
102 |
tttcttg--tatagtataaaccagtccaattcacaaaaagagaaaatctcgagtctccatttttgctttctcagtttc--------ataaacaaatattt |
191 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1785397 |
tttcttgtatatagtataaaccagtccaattcacaaaaagagaaaatctcgagtctccatttttgctttctcagtttcataagcaaataaacaaatattt |
1785496 |
T |
|
| Q |
192 |
ataccaaattgcaaatgtttcctatttacacacctcttagttactggccacatgttatcagagttacattttaagaattccctttaatttttatttacat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785497 |
ataccaaattgcaaatgtttcctatttacacacctcttagttactggccacatgttatcagagttacattttaagaattccctttaatttttatttacat |
1785596 |
T |
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| Q |
292 |
ctttatatggaatcaggtatattgat |
317 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1785597 |
ctttatatggaatcaggtatattgat |
1785622 |
T |
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