View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_16 (Length: 287)
Name: NF14433_low_16
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_16 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 6840305 - 6840043
Alignment:
| Q |
12 |
ttctttctttcttaataagcagaaagataaaataaaattgagaagaagagatatttaccagggagtgagttatgagaatggatataacgagaggttactt |
111 |
Q |
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| T |
6840305 |
ttctttctttcttaataagcagaaagataaaataaaattgagaagaagagatatttaccagggagtgagttatgagaatggatataacgagaggttactt |
6840206 |
T |
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| Q |
112 |
atgctgggtttaatgaaagtatttaatggaagtgtcacgttggtggtgtgttttttgagtcccattatataggagagcagcattgggttcattaccttag |
211 |
Q |
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| T |
6840205 |
atgctgggtttaatgaaagtatttaatggaagtgtcacgttggtggtgtgttttttgagtcccattatataggagagcagcattgggttcattcccttag |
6840106 |
T |
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| Q |
212 |
tgctatggtttttggttttaagtcgtgatcaaggcccgcatgtccccatgcatgaattctttg |
274 |
Q |
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| T |
6840105 |
tgctatgatttttggttttaagtcgtgatcaaggcccgcatgtccccatgcatgaattctttg |
6840043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 6834942 - 6834843
Alignment:
| Q |
38 |
ataaaataaaattgagaagaagagatattt-accagggagtgagttatgaga---atggatataacgagaggttacttatgctgggtttaatgaaagtat |
133 |
Q |
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| T |
6834942 |
ataaaataaaattgagtacaagtgatattttaccagggagtgagttatggtggtgatggatttcacgagaggttacttttgctgggtttaatgaaggtat |
6834843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 6631934 - 6631866
Alignment:
| Q |
23 |
ttaataagcagaaag-----ataaaataaaattgagaagaagagatatttaccagggagtgagttatga |
86 |
Q |
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| T |
6631934 |
ttaataagcagaaagataatataaaataaaattgagtataagagatatttaccggggagtgagttatga |
6631866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 6810520 - 6810470
Alignment:
| Q |
35 |
aagataaaataaaattgagaagaagagatatttaccagggagtgagttatg |
85 |
Q |
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| T |
6810520 |
aagataaaataaaagtgagtacaagagatatttacctgggagtgagttatg |
6810470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 6620886 - 6620844
Alignment:
| Q |
27 |
taagcagaaagataaaataaaattgagaagaagagatatttac |
69 |
Q |
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| T |
6620886 |
taagcagaaagataaaataaatttgagtagaagggatatttac |
6620844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10231 - 10176
Alignment:
| Q |
15 |
tttctttcttaataagcagaaagataaaataaaattgagaagaagagatatttacc |
70 |
Q |
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| T |
10231 |
tttctttcttaataagcagaaagataaaataaatttgagtagaagggatatttacc |
10176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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