View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14433_low_19 (Length: 257)

Name: NF14433_low_19
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14433_low_19
NF14433_low_19
[»] chr7 (2 HSPs)
chr7 (62-158)||(5458870-5458965)
chr7 (177-239)||(5458625-5458687)
[»] chr1 (1 HSPs)
chr1 (193-242)||(16465654-16465703)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 5458965 - 5458870
Alignment:
Q  62 atgcagtgtgtgattggacaagcactgaacccaaatgttgatggcagcgaatgaaccaagatactttgagaaaagtatttatttgatttacatatag 158  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5458965 atgcagtgtgtgatttgacaagcactgaacccaaatgttgatggcagcgaatgaaccaagatactttgagaaaagtattta-ttgatttacatatag 5458870  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 5458687 - 5458625
Alignment:
Q  177 tcggaaaagaaatcatcaagtattttgggagtatgttcagtgttcttggttttctcattgcct 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5458687 tcggaaaagaaatcatcaagtattttgggagtatgttcagtgttcttggttttctcattgcct 5458625  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 16465654 - 16465703
Alignment:
Q  193 caagtattttgggagtatgttcagtgttcttggttttctcattgcctttg 242  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  16465654 caagtattttgggagtatgttcagtattcatggttttctcattgcctttg 16465703  T

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