View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14433_low_2 (Length: 747)

Name: NF14433_low_2
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14433_low_2
NF14433_low_2
[»] chr3 (3 HSPs)
chr3 (10-730)||(28835066-28835785)
chr3 (102-373)||(28826220-28826494)
chr3 (186-329)||(28819738-28819881)
[»] chr4 (1 HSPs)
chr4 (674-707)||(16544993-16545026)


Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 10 - 730
Target Start/End: Original strand, 28835066 - 28835785
Alignment:
Q  10 aagaaaataatgattctatgagtattttccctattgattatttatacaacaaagaaaaatcaattttacaatatttattcaaaaatgctatcattgaaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28835066 aagaaaataatgattctatgagtattttccctattgattatttatacaacaaagaaaaatcaattttacaatatttattcaaaaatgctatcattgaaca 28835165  T
Q  110 gggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggtccatgattttgaaagtgaagtaaagcttata 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28835166 gggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggcccatgattttgaaagtgaagtaaagcttata 28835265  T
Q  210 agcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacagcagcctag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28835266 agcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacagcagcctag 28835365  T
Q  310 acaaattcttatttggtaaatctcttcaattcaaccactaagacaatcatttaatttgttgaatcttgcttcttcnnnnnnnnnctttccataatctcaa 409  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||||    
T  28835366 acaaattcttatttggtaactctcttcaattcaaccactaatacaatcatttaatttgttgaatcttgcttcttcttttttttcttttccataatctcaa 28835465  T
Q  410 gtacatgattatccacagaattcatttaaagatcttgatattatgattcttcttgtacaatgaattttttataagagagtaagaaaatgtatatacttgg 509  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28835466 gtacatga-tatccacagaattcatttaaagatcttgatattatgattcttcttgtacaatgaattttttataagagagtaagaaaatatatatacttgg 28835564  T
Q  510 atctatgatacagactttctcttcactctaattttctttattgtattttgtgacagtgaagatgtcttgtgtgcagtgaacatatgaccacacttttcta 609  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28835565 atctatgatacagattttctcttcactctaattttctttgttgtattttttgacagtgaagatgtcttgtgtgcagtgaacatatgaccacacttttcta 28835664  T
Q  610 ttatgtatatgttctttctcttaggtagttatttcattagtaaccatccattcattttttgactgtaaaataaacttcattcattcaaatggtaaaatct 709  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28835665 ttatgtatatgttctttctctttggtagttatttcattagtaaccatccattcattttttgactgtaaaataaacttcattcattcaaatggtaaaatct 28835764  T
Q  710 gaataatacaatctgtaacta 730  Q
    |||||||||||||||||||||    
T  28835765 gaataatacaatctgtaacta 28835785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 102 - 373
Target Start/End: Original strand, 28826220 - 28826494
Alignment:
Q  102 attgaacagggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggtccatgattttgaaagtgaagtaa 201  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||||||||||||||||||||    
T  28826220 attgaatagggtactctgaaaaatggaaatgttgtagcagttaagaaactagttttgggaaaatcaagcaagatagacaatgattttgaaagtgaagtaa 28826319  T
Q  202 agcttataagcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacag 301  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||||||||| ||||||||||| || |||||||||||    
T  28826320 agcttataagcaatgttcatcataggaatcttgttagacttcttggctgttgcagtaaaagccaagagagaatccttgtttatgaatacatggcaaacag 28826419  T
Q  302 cagcctagacaaattcttatttgg---taaatctcttcaattcaaccactaagacaatcatttaatttgttgaat 373  Q
    |||||||||||||||||| |||||   ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  28826420 cagcctagacaaattcttgtttggtaataattctcttcaattcaaccactaatacaatcatttaatttgttgaat 28826494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 28819738 - 28819881
Alignment:
Q  186 tttgaaagtgaagtaaagcttataagcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatg 285  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||| |||   ||||| || ||| ||| ||||  |||||||||||| ||||||||||    
T  28819738 tttgaaagtgaggtgaagctcataagtaatgttcatcataggaatctagttcggcttctcggatgttgcagtaaaggccaagagagaatccttgtttatg 28819837  T
Q  286 agtatatggcaaacagcagcctagacaaattcttatttggtaaa 329  Q
    | || |||||||||||||| || |||| ||||||||||||||||    
T  28819838 aatacatggcaaacagcagtcttgacagattcttatttggtaaa 28819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 707
Target Start/End: Original strand, 16544993 - 16545026
Alignment:
Q  674 gtaaaataaacttcattcattcaaatggtaaaat 707  Q
    ||||||||||||||||||||||||||| ||||||    
T  16544993 gtaaaataaacttcattcattcaaatgttaaaat 16545026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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