View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_20 (Length: 253)
Name: NF14433_low_20
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 42187722 - 42187560
Alignment:
| Q |
73 |
agaaagcaaaacaaagattagaaacgtacaannnnnnnn-ctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaacttca |
171 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42187722 |
agaaagcaaaacaaagattagaaacgtacaatttttttttctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaacttca |
42187623 |
T |
|
| Q |
172 |
tgcttctttttaacattagggactgtgtcaattgtaacatcctcctccaagttctgtggaaaa |
234 |
Q |
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| T |
42187622 |
tgcttctttttaaaattagggacagtgtcaattgtaacatcctcctccaagttctgtggaaaa |
42187560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 42197646 - 42197536
Alignment:
| Q |
73 |
agaaagcaaaacaaagattagaaacgtacaannnnnnnnctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaacttcat |
172 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42197646 |
agaaagcaaaacaaagattagaaacgtacaattttttttctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaacttcat |
42197547 |
T |
|
| Q |
173 |
gcttcttttta |
183 |
Q |
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||||||||||| |
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| T |
42197546 |
gcttcttttta |
42197536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 42197343 - 42197284
Alignment:
| Q |
175 |
ttctttttaacattagggactgtgtcaattgtaacatcctcctccaagttctgtggaaaa |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42197343 |
ttctttttaacattagggactgtgtcaattgtaacatcctcctccaagttctgtggaaaa |
42197284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 42204490 - 42204407
Alignment:
| Q |
151 |
tacataccaacattaacttcatgcttctttttaacattagggactgtgtcaattgtaacatcctcctccaagttctgtggaaaa |
234 |
Q |
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|||| |||||||||||||||||| ||||| |||||||| ||||| || |||||||||||||| ||||||||||||| ||||||| |
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| T |
42204490 |
tacacaccaacattaacttcatgtttcttcttaacattggggacggtatcaattgtaacatcatcctccaagttctatggaaaa |
42204407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 35612117 - 35612150
Alignment:
| Q |
35 |
tgaagaaattgaaagaaccatgaattctttctat |
68 |
Q |
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| T |
35612117 |
tgaagaaattgaaagaaccatgaattctttctat |
35612150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 42199400 - 42199371
Alignment:
| Q |
35 |
tgaagaaattgaaagaaccatgaattcttt |
64 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42199400 |
tgaagaaattgaaagaaccatgaattcttt |
42199371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 29291418 - 29291451
Alignment:
| Q |
35 |
tgaagaaattgaaagaaccatgaattctttctat |
68 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
29291418 |
tgaagaaattgaaagaaccatgaattctttctat |
29291451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 4018689 - 4018656
Alignment:
| Q |
35 |
tgaagaaattgaaagaaccatgaattctttctat |
68 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
4018689 |
tgaagaaattgaaagaaccatgaattctttctat |
4018656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 24465806 - 24465839
Alignment:
| Q |
35 |
tgaagaaattgaaagaaccatgaattctttctat |
68 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
24465806 |
tgaagaaattgaaagaaccatgaattctttctat |
24465839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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