View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_5 (Length: 543)
Name: NF14433_low_5
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 191 - 533
Target Start/End: Original strand, 1696050 - 1696392
Alignment:
| Q |
191 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtc |
290 |
Q |
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| T |
1696050 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtc |
1696149 |
T |
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| Q |
291 |
caaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactg |
390 |
Q |
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| T |
1696150 |
caaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactg |
1696249 |
T |
|
| Q |
391 |
aactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactga |
490 |
Q |
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| T |
1696250 |
aactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactga |
1696349 |
T |
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| Q |
491 |
aatgatactgaaaagagaagaagaagtgattaacaaacctatg |
533 |
Q |
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| T |
1696350 |
aatgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 210 - 533
Target Start/End: Original strand, 1685520 - 1685835
Alignment:
| Q |
210 |
tatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtccaaacgagataacattccc |
309 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaatagagaaagagagagtttaattagttaccctggtgcgaagaacagtccaaacgagataacattccc |
1685619 |
T |
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| Q |
310 |
tgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactgaactaaagacttctaa |
406 |
Q |
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| T |
1685620 |
ttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaatcgtaactgaactaaaaacttcaaa |
1685719 |
T |
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| Q |
407 |
aatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactgaaatgatactgaaaaga |
506 |
Q |
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| T |
1685720 |
aatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataa-----------actgaaaaga |
1685808 |
T |
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| Q |
507 |
gaagaagaagtgattaacaaacctatg |
533 |
Q |
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| T |
1685809 |
gaagaagaagtgattaacaaacctatg |
1685835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 1695909 - 1695981
Alignment:
| Q |
59 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcat |
131 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcat |
1695981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 1685404 - 1685447
Alignment:
| Q |
86 |
atcgttgatctaaatatagctggtatactaaggttgattctttc |
129 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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