View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_6 (Length: 478)
Name: NF14433_low_6
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 50292253 - 50292000
Alignment:
| Q |
17 |
aagtttttgtgattgtgtggagaatatttgatgaaaagcttcgtcctttcatgaacgaagcgctcaaaattaatcatcatgttcatggctatgtggccac |
116 |
Q |
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| T |
50292253 |
aagtttttgtgattgtgtggagaatatttgatgaaaagcttcgtcctttcatgaacgaagcgctcaaaattaatcatcatgttcatggctatgtggccac |
50292154 |
T |
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| Q |
117 |
tcttatccttcttttctcattaacttattgctgttatttcactctcacaaattaaaaaatgattgattttgattgagcaaaagggtttctctgttttctc |
216 |
Q |
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| T |
50292153 |
tcttatccttcttttctcattaacttattgctgttatttcattctcacaaattaaaaaatgattgattttgattgagcaaaagggtttctctgttttctc |
50292054 |
T |
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| Q |
217 |
ataaaaaatgttgctttgtagattattgcctcaatatggtttctggtgattgac |
270 |
Q |
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| T |
50292053 |
ataaaaaatgttgctttgtagattattgcctcaatatggtttctggtgattgac |
50292000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 370 - 474
Target Start/End: Complemental strand, 50291900 - 50291796
Alignment:
| Q |
370 |
tgtcagcatgtaaataagctcaaggagcatccatcatcttagaataaaataatgaggaactgtacatgttggcgagcctttattctatgatcattgtgtc |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50291900 |
tgtcagcatgtaaataagctcaaggagcatccatcatcttagaataaaataatgaggaactgtacatgttggcgagcctttattctatgatcattgtgtc |
50291801 |
T |
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| Q |
470 |
aatat |
474 |
Q |
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| T |
50291800 |
aatat |
50291796 |
T |
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