View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14433_low_8 (Length: 398)
Name: NF14433_low_8
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14433_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 4814615 - 4814387
Alignment:
| Q |
12 |
atggtggtggtggcgacaagggaagtgtcggatagtacaatagcggtgctgattgttgcataaccatggctgatggaggctgcaacttatcataagttca |
111 |
Q |
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| T |
4814615 |
atggtggtggttgcgacaagttaagtgtcggataatacaatagtgatgctgattgcaacataaccatggctgatgaaggctgcaacttatcaagagttca |
4814516 |
T |
|
| Q |
112 |
taatctgattgctttagttgcagcttcacaatatatctcgaatccagaaatctagccatggaaatataataataaacaatgctttaattttgatacatt- |
210 |
Q |
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||||||||||||||||| | |||| |||| ||| | | || ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
4814515 |
taatctgattgctttagaagtagctccacagtatcttttgattccagaaatctagccatggaaatttaataataaacaacggtttaattttgatacattc |
4814416 |
T |
|
| Q |
211 |
---gttggagtaaattttttatactgtca |
236 |
Q |
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| T |
4814415 |
ttggtcggagtaaatgttttatactgtca |
4814387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 4865503 - 4865265
Alignment:
| Q |
20 |
ggtggcgacaagggaagtgtcggatagtacaatagcggtgctgattgttgcataaccatggctgatggaggctgcaa-------------cttatcataa |
106 |
Q |
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||||||| ||| ||||||||||||||||||||| | ||||||||||| ||||| || |||||| |||||||||||| ||||||| | |
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| T |
4865503 |
ggtggcggcaaaggaagtgtcggatagtacaatggtggtgctgattgcggcatagccgtggctggtggaggctgcaaagcttctttttttcttatcacga |
4865404 |
T |
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| Q |
107 |
gttcataatctgattgctttagttgcagcttcacaatatatctcgaatccagaaatctagccatggaaatataataataaacaatg-ctttaattttgat |
205 |
Q |
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| T |
4865403 |
gttcataatcagattgctttagttgcagctccacaatatctcttgaatccacaagtctggccatggaaatataataataaataacgagtttaattttgat |
4865304 |
T |
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| Q |
206 |
acattgttggagtaaattttttatactgtcatacaatca |
244 |
Q |
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| | ||| |||| ||||||||| ||||||| ||||||| |
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| T |
4865303 |
atactgtcagagtgaattttttacactgtcaaacaatca |
4865265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 4664905 - 4664792
Alignment:
| Q |
164 |
tagccatggaaatataataataaacaatgctttaattttgatacattgttggagtaaattttttatactgtcatacaatcataagtcacaaccaatcata |
263 |
Q |
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||||||||||||| ||||| ||||||| | ||||||||||||||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||| ||| |
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| T |
4664905 |
tagccatggaaatctaatagtaaacaacgatttaattttgatacattgtcggagtaaatgttttataccgtcaaacaatcaaaagttacaaccaacaata |
4664806 |
T |
|
| Q |
264 |
catgtgacttttaa |
277 |
Q |
| |
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| | |||||||||| |
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| T |
4664805 |
cgtatgacttttaa |
4664792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 4811934 - 4811860
Alignment:
| Q |
113 |
aatctgattgctttagttgcagcttcacaatatatctcgaatccagaaatctagccatggaaatataataataaa |
187 |
Q |
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|||| |||||||||||||| |||| |||||||| ||| ||||||| || || ||||||||||||||||||||||| |
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| T |
4811934 |
aatcagattgctttagttgtagctccacaatatctcttgaatccaaaagtcaagccatggaaatataataataaa |
4811860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 4664935 - 4664903
Alignment:
| Q |
14 |
ggtggtggtggcgacaagggaagtgtcggatag |
46 |
Q |
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| T |
4664935 |
ggtggtggtggcgacaagggaagtgtcggatag |
4664903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 360 - 388
Target Start/End: Complemental strand, 12141563 - 12141535
Alignment:
| Q |
360 |
taggcatggcaacaaaacccatacctatg |
388 |
Q |
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| T |
12141563 |
taggcatggcaacaaaacccatacctatg |
12141535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 17885661 - 17885624
Alignment:
| Q |
347 |
ccctaattgcaagtaggcatggcaacaaaacccatacc |
384 |
Q |
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| T |
17885661 |
ccctaattgcaagtaggcatggcaacaaaacccatacc |
17885624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 32303248 - 32303215
Alignment:
| Q |
351 |
aattgcaagtaggcatggcaacaaaacccatacc |
384 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
32303248 |
aatttcaagtaggcatggcaacaaaacccatacc |
32303215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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