View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14433_low_9 (Length: 391)

Name: NF14433_low_9
Description: NF14433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14433_low_9
NF14433_low_9
[»] chr6 (2 HSPs)
chr6 (287-384)||(67084-67182)
chr6 (19-88)||(66817-66886)
[»] chr7 (1 HSPs)
chr7 (307-382)||(15673757-15673835)
[»] chr1 (1 HSPs)
chr1 (287-384)||(10160050-10160148)
[»] chr4 (1 HSPs)
chr4 (287-376)||(24571974-24572059)
[»] chr3 (1 HSPs)
chr3 (306-376)||(49906921-49906993)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 384
Target Start/End: Original strand, 67084 - 67182
Alignment:
Q  287 tataatttctacacaacgacgacttgcttctaaaa-aagagtccaatgcgctcacccgtccgtatacacagtatcctgctagagcatttgattcatctc 384  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  67084 tataatttctacacaacggcgacttgcttccaaaaaaagagtccaatgcgctcaccggtccgtatacacggtatgctgctagagcatttgattcatctc 67182  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 66817 - 66886
Alignment:
Q  19 aaaactcctaaacagcggcggacctgaacatgacatggtgtggtaagtgccacaccaacctaagtcaata 88  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  66817 aaaactcttaaacagcggcagacctgaacatgacatggtgtggtaagtgccacaccaacctaagtcaata 66886  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 15673835 - 15673757
Alignment:
Q  307 gacttgcttctaaaaaagagtccaatgcgctcacccgtccgtatacaca---gtatcctgctagagcatttgattcatc 382  Q
    |||||||||  |||||||||| |||||||||||||||| ||||| ||||    ||||||||||||||||||||||||||    
T  15673835 gacttgctttcaaaaaagagtgcaatgcgctcacccgttcgtatgcacacggctatcctgctagagcatttgattcatc 15673757  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 384
Target Start/End: Original strand, 10160050 - 10160148
Alignment:
Q  287 tataatttctacacaacgacgacttgcttct-aaaaaagagtccaatgcgctcacccgtccgtataca-cagtatcctgctagagcatttgattcatctc 384  Q
    |||||||||||| |||   |||||||||||| |||||||||  ||| |||||||||||||||||| ||  |||||| ||||| | |||||||||||||||    
T  10160050 tataatttctacgcaattgcgacttgcttctaaaaaaagag-gcaacgcgctcacccgtccgtatgcatgagtatcatgctacaacatttgattcatctc 10160148  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 24572059 - 24571974
Alignment:
Q  287 tataatttctacacaacgacgacttgcttctaaaaaagagtccaatgcgctcacccgtccgtatacacagtatcctgctagagcatttga 376  Q
    ||||||||||| ||||   ||||||||||| |||||||||  ||| |||||||| ||||| ||| |||||    ||||||||||||||||    
T  24572059 tataatttctatacaattgcgacttgcttccaaaaaagagcgcaacgcgctcactcgtccatatgcacag----ctgctagagcatttga 24571974  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 49906921 - 49906993
Alignment:
Q  306 cgacttgcttctaaaaaa-gagtccaatgcgctcacccgtccgtatacaca-gtatcctgctagagcatttga 376  Q
    ||||||||||| |||||| |||  |||  ||||||| ||||||||| |||| |||||||||||||||||||||    
T  49906921 cgacttgcttccaaaaaaagagcgcaacacgctcactcgtccgtatgcacaagtatcctgctagagcatttga 49906993  T

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