View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14434_high_1 (Length: 732)

Name: NF14434_high_1
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14434_high_1
NF14434_high_1
[»] chr2 (8 HSPs)
chr2 (511-716)||(18824359-18824564)
chr2 (5-287)||(18820077-18820357)
chr2 (296-455)||(18824146-18824304)
chr2 (137-278)||(16735529-16735667)
chr2 (122-287)||(14866713-14866877)
chr2 (144-205)||(33240209-33240271)
chr2 (144-205)||(33248130-33248192)
chr2 (120-192)||(27746300-27746372)
[»] chr3 (6 HSPs)
chr3 (131-205)||(19431853-19431927)
chr3 (120-202)||(19225298-19225381)
chr3 (155-205)||(17769625-17769675)
chr3 (155-205)||(19070926-19070976)
chr3 (155-205)||(1463823-1463873)
chr3 (163-205)||(16093925-16093967)
[»] chr4 (10 HSPs)
chr4 (122-205)||(10328878-10328961)
chr4 (148-205)||(15193230-15193287)
chr4 (156-201)||(24619155-24619200)
chr4 (159-205)||(19052773-19052819)
chr4 (155-205)||(13066951-13067001)
chr4 (155-205)||(13977894-13977944)
chr4 (155-205)||(23087176-23087226)
chr4 (137-179)||(32469035-32469077)
chr4 (159-205)||(32469087-32469133)
chr4 (152-205)||(17474656-17474709)
[»] chr8 (4 HSPs)
chr8 (145-205)||(15598287-15598347)
chr8 (155-205)||(17687449-17687499)
chr8 (156-202)||(17879134-17879180)
chr8 (155-205)||(24498741-24498791)
[»] chr7 (14 HSPs)
chr7 (131-273)||(9064969-9065108)
chr7 (155-278)||(19416693-19416813)
chr7 (145-204)||(9804629-9804688)
chr7 (155-204)||(9802648-9802697)
chr7 (156-205)||(12223071-12223120)
chr7 (155-199)||(15304117-15304161)
chr7 (155-204)||(9762156-9762205)
chr7 (137-177)||(11376393-11376433)
chr7 (145-180)||(3779270-3779305)
chr7 (137-180)||(15304166-15304209)
chr7 (128-179)||(19416819-19416870)
chr7 (145-205)||(16812465-16812527)
chr7 (156-205)||(1878896-1878945)
chr7 (156-205)||(20597840-20597889)
[»] chr1 (3 HSPs)
chr1 (154-205)||(23917331-23917382)
chr1 (156-205)||(18515495-18515544)
chr1 (137-180)||(23917386-23917429)
[»] chr5 (3 HSPs)
chr5 (155-274)||(12078268-12078383)
chr5 (156-205)||(26119201-26119250)
chr5 (152-202)||(20689696-20689746)
[»] scaffold0606 (1 HSPs)
scaffold0606 (155-205)||(5007-5057)
[»] chr6 (10 HSPs)
chr6 (137-202)||(13242716-13242781)
chr6 (155-204)||(24471021-24471070)
chr6 (137-177)||(31720169-31720209)
chr6 (155-202)||(24481066-24481113)
chr6 (155-205)||(14757818-14757867)
chr6 (216-278)||(16739823-16739885)
chr6 (155-205)||(30372793-30372843)
chr6 (163-205)||(31720225-31720267)
chr6 (139-180)||(12183447-12183488)
chr6 (156-205)||(12183494-12183543)
[»] scaffold0340 (2 HSPs)
scaffold0340 (137-180)||(17520-17563)
scaffold0340 (156-278)||(17395-17514)
[»] scaffold1339 (1 HSPs)
scaffold1339 (155-205)||(1731-1781)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 511 - 716
Target Start/End: Original strand, 18824359 - 18824564
Alignment:
Q  511 acgccactttatctcactttccaacctcacctaatctatctactccctctaatggcttcttctcagttgacagcatcatcaatttcaacgaggagcgttg 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18824359 acgccactttatctcactttccaacctcacctaatctatctactccctctaatggcttcttctcagttgacagcatcatcaatttcaacgaggagcgttg 18824458  T
Q  611 catcctttgaaggacttcgaccatcaagtgttcagtttcattctgctcgacatgttaggattggtaatcctgctcgtaggtccttcaaggctttgattgt 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18824459 catcctttgaaggacttcgaccatcaagtgttcagtttcattctgctcgacatgttaggattggtaatcctgctcgtaggtccttcaaggccttgattgt 18824558  T
Q  711 caaagc 716  Q
    ||||||    
T  18824559 caaagc 18824564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 18820077 - 18820357
Alignment:
Q  5 gattgtggcacctcttctttggcttcattctcctttcctcgacatgatttattgacactgtctctttatctgcggtcacactatcgatcttgccaagtgc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  18820077 gattgtggcacctcttctttggcttcattctcctttcctcgacatgatttgttgacactgtctctttatctgcagccacactatcgatcttgcccagtgc 18820176  T
Q  105 ctcatttcttggatgaaccaaataattttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatag 204  Q
    |||||||||||||||||||||| |||||| | |||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  18820177 ctcatttcttggatgaaccaaacaattttctatgtaatctttgtttcttagaagtatcttgcttgtgtgcttgatctattgtaatcttgtgtgattatag 18820276  T
Q  205 tnnnnnnnnnnctcttgtaagtgacaaagggatttgactactttcagattgtggaagaaaccatgataaattgcgctctctct 287  Q
    |          |||||||||||||||| |||| | ||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  18820277 t--aaaaaaaactcttgtaagtgacaaggggactggactacttctagattgtggaagaaaccatgataaattgctctctctct 18820357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 296 - 455
Target Start/End: Original strand, 18824146 - 18824304
Alignment:
Q  296 attaaagcgaaaacatctttaattagtgatttataggggttaggtaacttacctaaacatttttagtccaaacaaaaaattgcaattgcaatgggcgcgt 395  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18824146 attaaagcgaaaacatctctaattactgatttataagggttaggtaacttacctaaacatttttagtccaaacaaaaaattgcaa-tgcaatgggcgcgt 18824244  T
Q  396 gagtgacacgtgaattctagaataatcacgttatcatcatcttcatataaaaccctccta 455  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  18824245 gagtgacacgtgaattctagaataatcacgttatcatcgtcgtcatataaaaccctccta 18824304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 16735529 - 16735667
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttgtaagtgacaaaggga 236  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||          |||||||||||||||| | ||    
T  16735529 tgtaatctttgtttgttagaagtctcttgcttgtgtgcttaagcaattgtaatcttgtgtgattatagt---gaaaaatctcttgtaagtgacaaggaga 16735625  T
Q  237 tttgactactttcagattgtggaagaaaccatgataaattgc 278  Q
     |  ||||||||||||||||||||| | ||||||||||||||    
T  16735626 gtgtactactttcagattgtggaaggagccatgataaattgc 16735667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 122 - 287
Target Start/End: Complemental strand, 14866877 - 14866713
Alignment:
Q  122 ccaaataattttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttg 221  Q
    ||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||  |          ||||||    
T  14866877 ccaaacaattttctttgtaatctttgtttgttagaagtctcttgcttgtgtacttcagcaattgtaatcttgagtga-tattatcgtgaaaaatctcttg 14866779  T
Q  222 taagtgacaaagggatttgactactttcagattgtggaagaaaccatgataaattgcgctctctct 287  Q
    |||||||||| |||| | |||||||||||||||||||||  ||||| |||||||||  ||||||||    
T  14866778 taagtgacaaggggactggactactttcagattgtggaatgaaccaagataaattgttctctctct 14866713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 33240271 - 33240209
Alignment:
Q  144 tttgtttgtt-agaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  33240271 tttgtttgtttataagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 33240209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 33248192 - 33248130
Alignment:
Q  144 tttgtttgtt-agaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  33248192 tttgtttgtttataagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 33248130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 27746300 - 27746372
Alignment:
Q  120 aaccaaataattttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatctt 192  Q
    ||||||| ||| || | |||||||||||||||||| |||| |||||||||||| ||||| | |||||||||||    
T  27746300 aaccaaacaatattctttgtaatctttgtttgttaaaagtatcttgcttgtgtgcttgatcaattgtaatctt 27746372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 19431853 - 19431927
Alignment:
Q  131 tttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  19431853 tttttttgtaatctttgtttgttagaagtctcttgcttgtgttcttgagcaattgtaatcttgtgtgattatagt 19431927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 19225381 - 19225298
Alignment:
Q  120 aaccaaataatttt-ttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattat 202  Q
    ||||||| |||||| || |||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||| |||||||    
T  19225381 aaccaaacaattttcttttgtaatctttgttttttagaagtttcttgcttgtgtgcttgagcaattgtaatcttgtttgattat 19225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 17769625 - 17769675
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  17769625 gaagtctcatgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 17769675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 19070926 - 19070976
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  19070926 gaagtctcatgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 19070976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 1463873 - 1463823
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  1463873 gaagtctcttgcttgtgtgcttgagcaattgtaatcttgcatgattatagt 1463823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 16093967 - 16093925
Alignment:
Q  163 ttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||    
T  16093967 ttgcatgtgtgcttgagcgattgtaatcttgtgtgattatagt 16093925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 10328878 - 10328961
Alignment:
Q  122 ccaaataattttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||| |||||| | |||||||||||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||    
T  10328878 ccaaacaattttctttgtaatctttgtttgtcagaattctcttgcttgtgtgctttagcatttgtaatcttgtgtgattatagt 10328961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 15193287 - 15193230
Alignment:
Q  148 tttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||| |||| ||||||| ||| ||| ||||||||||||||||||||||||    
T  15193287 tttgttagaagtgtctttcttgtgtgcttaagcaattgtaatcttgtgtgattatagt 15193230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 24619200 - 24619155
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgatta 201  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  24619200 aagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgatta 24619155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 19052819 - 19052773
Alignment:
Q  159 tctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  19052819 tctcttggttgtgtccttgagcaattgtaatcttgtgtgattatagt 19052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 13066951 - 13067001
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||| ||||||| ||||||| |||||||| || ||||||||||||    
T  13066951 gaagtctcttacttgtgtgcttgagcaattgtaatattttgtgattatagt 13067001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 13977894 - 13977944
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||| |||||||  ||||||||||  |||||||||||    
T  13977894 gaagtctcttgcttgtgtgcttgagcatttgtaatctttagtgattatagt 13977944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 23087226 - 23087176
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||| |||||| ||||||| ||| |||| |||||||||||||||    
T  23087226 gaagtctcttgtttgtgtgcttgagcaattataatattgtgtgattatagt 23087176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 32469035 - 32469077
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgag 179  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||    
T  32469035 tgtaatatttgtttgttagaagtctcttacttgtgtgcttgag 32469077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 32469087 - 32469133
Alignment:
Q  159 tctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||| |||||||| ||||||| |||||||||||| |||||||||||    
T  32469087 tctctggcttgtgtgcttgagccattgtaatcttgagtgattatagt 32469133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 17474656 - 17474709
Alignment:
Q  152 ttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||||||   |||| ||||||| |||||||| |||||||||||||||    
T  17474656 ttagaagtctcttgagagtgtccttgagcaattgtaatattgtgtgattatagt 17474709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 15598347 - 15598287
Alignment:
Q  145 ttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  15598347 ttgtttgttataagtctcttgcttgtgtgcttgaccaattgtaatcttgtgtgattatagt 15598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 17687499 - 17687449
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  17687499 gaagtctcttgcttgtgtgcttgagcaattgtaatcttatgtgattatagt 17687449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 17879180 - 17879134
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattat 202  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  17879180 aagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattat 17879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 24498741 - 24498791
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  24498741 gaagtatcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 24498791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 9065108 - 9064969
Alignment:
Q  131 tttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttgtaagtgaca 230  Q
    ||||| |||||||||||||| | | |||| |||||||||||| ||||||| |||||||||||| |||||||||||          |||||||| ||||||    
T  9065108 tttttttgtaatctttgtttataataagtatcttgcttgtgtgcttgagcaattgtaatcttgagtgattatagt---gaaaagtctcttgtaggtgaca 9065012  T
Q  231 aagggatttgactactttcagattgtggaagaaaccatgataa 273  Q
    | |||| |||||||| | ||||||||||||  ||||| |||||    
T  9065011 aggggacttgactacatccagattgtggaatgaaccaggataa 9064969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 19416813 - 19416693
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttgtaagtgacaaagggatttgactactttcagatt 254  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||||||||          ||||| ||||||||||  ||| | |||||||| | ||||    
T  19416813 gaaggctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt---gaaaaatctcttataagtgacaagaggactagactacttccggatt 19416717  T
Q  255 gtggaagaaaccatgataaattgc 278  Q
     |||||| ||||||||||||||||    
T  19416716 atggaaggaaccatgataaattgc 19416693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 9804688 - 9804629
Alignment:
Q  145 ttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatag 204  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  9804688 ttgtttgttataagtgtcttgcttgtgtgcttgagcaattgtaatcttgtgttattatag 9804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9802697 - 9802648
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatag 204  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  9802697 gaagtctcttgcttatgtgcttgagcaattgtaatcttgtgtgattatag 9802648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 12223071 - 12223120
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  12223071 aagtctcttgcttgtgtgtttgagcaattgtaatcttgtgtgattatagt 12223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 15304161 - 15304117
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgat 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||    
T  15304161 gaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgat 15304117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9762205 - 9762156
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatag 204  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||||||    
T  9762205 gaagtctcttgcttgtgtgcttaaccaattgtaatcttgtgtgattatag 9762156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 11376433 - 11376393
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttg 177  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  11376433 tgtaatctttgtttgttagaagtctctttcttgtgtgcttg 11376393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 3779270 - 3779305
Alignment:
Q  145 ttgtttgttagaagtctcttgcttgtgtacttgagc 180  Q
    |||||||||||||||||||||||||||| |||||||    
T  3779270 ttgtttgttagaagtctcttgcttgtgtgcttgagc 3779305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 15304209 - 15304166
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgagc 180  Q
    |||||| |||||||||||||||| |||||||||||| |||||||    
T  15304209 tgtaatttttgtttgttagaagtttcttgcttgtgtgcttgagc 15304166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 19416870 - 19416819
Alignment:
Q  128 aattttttgtgtaatctttgtttgttagaagtctcttgcttgtgtacttgag 179  Q
    |||||| | |||||||||||||||| ||||||||||||||||| | ||||||    
T  19416870 aattttctttgtaatctttgtttgtaagaagtctcttgcttgtcttcttgag 19416819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 16812527 - 16812465
Alignment:
Q  145 ttgtttgttagaagtctctt-gcttgtgtacttgagctattgtaat-cttgtgtgattatagt 205  Q
    |||||||||||||||||||| ||||||||  |||||| |||||||| ||||| ||||||||||    
T  16812527 ttgtttgttagaagtctcttggcttgtgtgtttgagcaattgtaatccttgtatgattatagt 16812465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 1878896 - 1878945
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||||| ||| ||||||  ||||||||||| ||||||||||||    
T  1878896 aagtctcttgcttctgtgcttgagaaattgtaatcttatgtgattatagt 1878945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 20597889 - 20597840
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||||  ||| ||||||| ||||||||||||| ||||||||||    
T  20597889 aagtctcttgctaatgtgcttgagcaattgtaatcttgtatgattatagt 20597840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 23917382 - 23917331
Alignment:
Q  154 agaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  23917382 agaagtctcttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 23917331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 18515544 - 18515495
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  18515544 aagtcttttgcttgtgtgcttgagcaattgtaatcttgtgtgattatagt 18515495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 23917429 - 23917386
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgagc 180  Q
    ||||||||||||||||||||||||| |||||||| | |||||||    
T  23917429 tgtaatctttgtttgttagaagtcttttgcttgtctgcttgagc 23917386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 12078383 - 12078268
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttgtaagtgacaaagggatttgactactttcagatt 254  Q
    |||||||||||||||||| ||||||| |||||||||||| || ||||||||          |||||||||||||||| | || |||||||||| | ||||    
T  12078383 gaagtctcttgcttgtgtgcttgagcaattgtaatcttg-gtaattatagtgaaaaat---ctcttgtaagtgacaaggcgacttgactacttccggatt 12078288  T
Q  255 gtggaagaaaccatgataaa 274  Q
    ||||||||||||| ||||||    
T  12078287 gtggaagaaaccaagataaa 12078268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 26119201 - 26119250
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||| ||| ||| ||||||| ||||||||||||||||||||||||    
T  26119201 aagtctctttcttatgttcttgagcaattgtaatcttgtgtgattatagt 26119250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 20689746 - 20689696
Alignment:
Q  152 ttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattat 202  Q
    ||||||||||||||||||||| |||||||  ||||||||||  ||||||||    
T  20689746 ttagaagtctcttgcttgtgtgcttgagcatttgtaatctttagtgattat 20689696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 5057 - 5007
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  5057 gaagtctcttgcttgtgtccttgagcaattgtaatcttgtatgattatagt 5007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 13242781 - 13242716
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattat 202  Q
    ||||||||||||||| ||||||| |||||||||| | | | ||| |||||||||||||||||||||    
T  13242781 tgtaatctttgtttgatagaagtttcttgcttgtatgcctaagcaattgtaatcttgtgtgattat 13242716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 24471021 - 24471070
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatag 204  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  24471021 gaagtctcttgcttgtgtgcttgagcaattataatcttgtgtggttatag 24471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 31720169 - 31720209
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttg 177  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  31720169 tgtaatctttgtttgttagaagtttcttgcttgtgtgcttg 31720209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 24481066 - 24481113
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattat 202  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  24481066 gaagtctcttgcttgtgtgcttgagcaattataatcttgtgtggttat 24481113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 14757867 - 14757818
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||  |||||||  |||||||||||||||||||||||    
T  14757867 gaagtctcttgcttgtgg-cttgagcatttgtaatcttgtgtgattatagt 14757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 16739885 - 16739823
Alignment:
Q  216 ctcttgtaagtgacaaagggatttgactactttcagattgtggaagaaaccatgataaattgc 278  Q
    ||||||||||||| || |||| | |||||||| | ||||||||||||||| | ||||||||||    
T  16739885 ctcttgtaagtgaaaaggggactggactacttccggattgtggaagaaactaggataaattgc 16739823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 30372843 - 30372793
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    ||||||||||||||||||  |||||| |||||||| |||||| ||||||||    
T  30372843 gaagtctcttgcttgtgtggttgagcaattgtaattttgtgtaattatagt 30372793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 31720225 - 31720267
Alignment:
Q  163 ttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||| ||||| | ||||||||||||||||||||||||    
T  31720225 ttgcttgtgtgcttgaacaattgtaatcttgtgtgattatagt 31720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 12183447 - 12183488
Alignment:
Q  139 taatctttgtttgttagaagtctcttgcttgtgtacttgagc 180  Q
    ||||||||||||||||||||| |||||||||| | |||||||    
T  12183447 taatctttgtttgttagaagtttcttgcttgtatgcttgagc 12183488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 12183494 - 12183543
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||||||||||||||   ||||| ||||||||||||| ||||||||||    
T  12183494 aagtctcttgcttgtgtggctgagcaattgtaatcttgtatgattatagt 12183543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 17563 - 17520
Alignment:
Q  137 tgtaatctttgtttgttagaagtctcttgcttgtgtacttgagc 180  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  17563 tgtaatctttgtttgttagaagtctcttgcttatgtgcttgagc 17520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 17514 - 17395
Alignment:
Q  156 aagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagtnnnnnnnnnnctcttgtaagtgacaaagggatttgactactttcagattg 255  Q
    |||||||||  |||||  ||||||| ||||||||||||||||||||||||          |||||||||||||||| |||| | |||| ||| | |||||    
T  17514 aagtctcttttttgtgcgcttgagcaattgtaatcttgtgtgattatagt---gaaaaatctcttgtaagtgacaaggggactagactgcttccggattg 17418  T
Q  256 tggaagaaaccatgataaattgc 278  Q
    |||||  ||||| ||||||||||    
T  17417 tggaaagaaccaggataaattgc 17395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 1781 - 1731
Alignment:
Q  155 gaagtctcttgcttgtgtacttgagctattgtaatcttgtgtgattatagt 205  Q
    |||||| ||||||||||| ||| ||| ||||||||||||||||||||||||    
T  1781 gaagtcgcttgcttgtgttcttaagcaattgtaatcttgtgtgattatagt 1731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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