View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14434_high_12 (Length: 293)

Name: NF14434_high_12
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14434_high_12
NF14434_high_12
[»] chr2 (1 HSPs)
chr2 (1-293)||(1581893-1582184)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1581893 - 1582184
Alignment:
Q  1 tcatctcaatcagatgatgaacgagccccacaagggcctttcactagaagaatcagagagacttgaaaccccttgggattagagaaaccttcctagatgg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  1581893 tcatctcaatcagatgatgaacgagccccacaagg-cctttcactagaagaatcagagagacttgaaaccctttgggattagagaaacctccctagatgg 1581991  T
Q  101 agacatatgacgggaccacaaatcccaacgaaacaaatcgaaagcatcgagggagtgttcgacgaacacatcgaaaacatcaaggcaagtgtaaactttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1581992 agacatatgacgggaccacaaatcccaacgaaacaaatcgaaagcatcaagggagtgttcaacgaacacatcgaaaacatcaaggcaagtgtaaactttt 1582091  T
Q  201 tgccaccaccctttgaaagggagcaatggcgtaatacaaaagtttcataagggaattgattgattcctagaaagatgtatgttgcagtttgct 293  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1582092 tgccaccacactttgaaagggagcaatggcgtaatacaagagtttcataagggaattgattgattcctagaaagatgtatgttgcagtttgct 1582184  T

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