View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_high_6 (Length: 373)
Name: NF14434_high_6
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_high_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 28607648 - 28607283
Alignment:
| Q |
1 |
aacactggatatattgcacttgtaccattaactgaaaatggaacaaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatg |
100 |
Q |
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| T |
28607648 |
aacactggatatattgcacttgtaccattaactgaaaatggaacaaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatg |
28607549 |
T |
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| Q |
101 |
caaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacaca |
200 |
Q |
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| T |
28607548 |
caaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctacgactggaaaacctgtcacagtgagaactaaagtccatattacaca |
28607449 |
T |
|
| Q |
201 |
agcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatg |
300 |
Q |
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| T |
28607448 |
agcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatg |
28607349 |
T |
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| Q |
301 |
attccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattcaagttcatctct |
366 |
Q |
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| T |
28607348 |
attccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattcaagttcatctct |
28607283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 7589959 - 7590136
Alignment:
| Q |
27 |
attaactgaaaatggaacaaataatatgaataaaatccaagcatatgt--gtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaa |
124 |
Q |
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| T |
7589959 |
attaattgaaaatggaagaaataacatgaataaaatccaagcatatgtacgtccgtgatcattgctactgttagt-----ctcaccaagatcagtatagt |
7590053 |
T |
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| Q |
125 |
gaagtttgagctcagaaagggtgtgagctat-aactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatt |
206 |
Q |
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| T |
7590054 |
gaagtatgagcccataaagggtgtgtgctataaattggaaaacctgtcacatcgagaactaaagtcagtaatacataagcatt |
7590136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 7590191 - 7590254
Alignment:
| Q |
298 |
atgattccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattcaagttca |
361 |
Q |
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| T |
7590191 |
atgattccgaaaatcgcaatggttgcagctttctttttaacatgtaaaatggtattcaagttca |
7590254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 439275 - 439615
Alignment:
| Q |
21 |
tgtaccattaactgaaaatggaacaaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagta |
120 |
Q |
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| T |
439275 |
tgtaccattaactgaaaatggaacaaataatacgaataaaatccaagcatatgtgtcactgatcatggctgatgttaatgcaaccttcccaagaccagta |
439374 |
T |
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| Q |
121 |
taaagaagtttgagctcagaaagggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttctt |
220 |
Q |
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| T |
439375 |
tagagaagtttaagctcagacagggtgtggactacaactggaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttctt |
439474 |
T |
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| Q |
221 |
caagttcagatccatcaccctttccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagt |
320 |
Q |
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| T |
439475 |
caagattagatccatcacccttgccataaaattttcgatgtagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagt |
439574 |
T |
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| Q |
321 |
tgcagatttctttttaacatgtaaaatggtattcaagttca |
361 |
Q |
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| T |
439575 |
tgcagctttctttttaacatgtaaaatggtattcaagttca |
439615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 56 - 365
Target Start/End: Complemental strand, 13658968 - 13658659
Alignment:
| Q |
56 |
ataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctat |
155 |
Q |
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|||||||||||| |||||||||||||||||||| || |||||||||| | |||||||||||||| ||||||||| ||||||||||| |||||||||| |
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| T |
13658968 |
ataaaatccaagaatatgtgtcactgatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagttttagctcagaaagtgtgtgagctac |
13658869 |
T |
|
| Q |
156 |
aactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaattt |
255 |
Q |
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| T |
13658868 |
aattgaaaaacttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaatttt |
13658769 |
T |
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| Q |
256 |
cgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattca |
355 |
Q |
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| T |
13658768 |
cgatgtagaatgtataacggtggtcccatcaccattggaaagatgatcccggaaatcgcaatggttgcagctttctttttaacatgtaaaatgccattca |
13658669 |
T |
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| Q |
356 |
agttcatctc |
365 |
Q |
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| T |
13658668 |
agtccatctc |
13658659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 365
Target Start/End: Complemental strand, 13651512 - 13651170
Alignment:
| Q |
23 |
taccattaactgaaaatggaacaaataatatgaataaaatccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtata |
122 |
Q |
| |
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||||| ||| ||||||||||| | || | || |||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
13651512 |
taccagtaattgaaaatggaagagttattgtgtataaaacccaagaatatgtgtcactgatcatagctgttgttaatgccgtctgaccaagaccggtatt |
13651413 |
T |
|
| Q |
123 |
aagaagtttgagctcagaaagggtgtgagctataactggaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttca |
222 |
Q |
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||||||||||||||| ||||| |||||||||| || || ||||| ||||| ||||||||||||||||||| |||| || |||| ||||| ||||||| |
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| T |
13651412 |
aagaagtttgagctcggaaagtgtgtgagctacaattgaaaaacttgtcatagtgagaactaaagtccattgtacataaacattcattgtactttcttcg |
13651313 |
T |
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| Q |
223 |
agttcagatccatcaccctttccataaaaatttcgatgtagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttg |
322 |
Q |
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| T |
13651312 |
agtttaggtccatcaccattgccataaaagtatcgatgtagattgtataaaattggccccattaccatcggaaagatgatcccggaaatcgcaatggttg |
13651213 |
T |
|
| Q |
323 |
cagatttctttttaacatgtaaaatggtattcaagttcatctc |
365 |
Q |
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|| |||||||||||||||||||||| ||||||||| |||||| |
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| T |
13651212 |
catctttctttttaacatgtaaaatgctattcaagtccatctc |
13651170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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