View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14434_high_9 (Length: 370)
Name: NF14434_high_9
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 354
Target Start/End: Complemental strand, 45460446 - 45460114
Alignment:
| Q |
22 |
tggcatacttgttgcgttgccaatcttcaccatgtctctgaaaccaaccgtcacagctagactgaaaatcatcaataaccagttgacatcggagatgtaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460446 |
tggcatacttgttgcgttgccaatcttcaccatgtctctgaaaccaaccgtcacagctagactgaaaatcatcaataaccagttgacatcggagatgtaa |
45460347 |
T |
|
| Q |
122 |
atctggccatgtattgtttttgatgtgtgaatgacttttactctgggaaaacaatttagtgctagacattggttaatgatggagaagctggctgttatag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460346 |
atctggccatgtattgtttttgatgtgtgaatgacttttactctgggaaaacaatttagtgctagacattggttaatgatggagaagctggctgttatag |
45460247 |
T |
|
| Q |
222 |
ttgcttggcttccgacagccgaagaaagtagggacaatactatgaatacatgtttggatggacctgcagtatgtcatcaccagcaatcactttagcaaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460246 |
ttgcttggcttccgacagccgaagaaagtagggacaatactatgaatacatgtttggatggacctgcagtatgtcatcaccagcaatcactttagcaaag |
45460147 |
T |
|
| Q |
322 |
cgactaaaaaaggcatcttagaaataaagggtg |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45460146 |
cgactaaaaaaggcatcttagaaataaagggtg |
45460114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University