View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_12 (Length: 349)
Name: NF14434_low_12
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 74 - 332
Target Start/End: Original strand, 10227648 - 10227901
Alignment:
| Q |
74 |
tgaagcatgagagttctttttcatctgagctggatggacattgactatgccattaggaagggatgtaataacatgtattactaaaaaccaacactctaga |
173 |
Q |
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| T |
10227648 |
tgaagcatgagagttctttttcatccgagctggatggacattgactatgccattaggaagggatgtaataacatgtattactaaaaaccaacactctaga |
10227747 |
T |
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| Q |
174 |
tgtagttgatctttatgaaaagtgtaagagatctaacaatctctccgtaatgtttataaagacaaagatacaattagatctctctcactgctggtttcaa |
273 |
Q |
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| T |
10227748 |
tgtagttgatctttatgaaaagtgaaagagatctaacaatctctccgtgatgtttataaagacaaaaatatatgttggtaatagt--atacatggttcaa |
10227845 |
T |
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| Q |
274 |
taatacctgctggttcatccttcttcatattgaatgacatagtcaatgtccatctacct |
332 |
Q |
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| T |
10227846 |
taatacctgctggttcatc---cttcatattgaatgacatagtcaatgtccatctacct |
10227901 |
T |
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