View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_13 (Length: 336)
Name: NF14434_low_13
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 320
Target Start/End: Complemental strand, 10689326 - 10689031
Alignment:
| Q |
25 |
attgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatgatgg |
124 |
Q |
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| T |
10689326 |
attgcacaaggatcatcaaatgaccttttttatagcattgaagttaaggatgcaattattccaccgtggattatctgcaatatatgtgcattgatgatgg |
10689227 |
T |
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| Q |
125 |
gatcccaagggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgtcgctttgaaatcaatttgtgataattcctttgg |
224 |
Q |
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| T |
10689226 |
gatcccaagggagaagaaactttgaggcaagttttgtgactgaaccactctcaattggcctcaatgttgctttgaaatcaatttgtgataattcctttgg |
10689127 |
T |
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| Q |
225 |
tattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatcattatcccctgt |
320 |
Q |
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| T |
10689126 |
tattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatggttcttatttagcatcattatcccctgt |
10689031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 43560265 - 43560372
Alignment:
| Q |
213 |
taattcctttggtattccaaaagcagcagttatgtcttctctatgttcatgtacactcaaaagtgtaaactactgtgatgattcttatttagcatcatta |
312 |
Q |
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|||||||||||| |||||| |||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||| || |
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| T |
43560265 |
taattcctttggcattccagaagctgcagttacgtcttccctatgttcatgtacactaaaaagtgtaaagtactgtgatggttcttatatagcatctcta |
43560364 |
T |
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| Q |
313 |
tcccctgt |
320 |
Q |
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| T |
43560365 |
tcccctgt |
43560372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 43559255 - 43559349
Alignment:
| Q |
26 |
ttgcacaaggatcatcaaatggtcttttttatagcattgaagttaaggatgcaattattccaccatggattatctgcaatatatgtgcattgatg |
120 |
Q |
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||||||||||||||||| |||||||||| | |||||||||| |||||||| || |||||||||| ||||||||| || |||||||||||||||| |
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| T |
43559255 |
ttgcacaaggatcatcagatggtcttttatgtagcattgaaattaaggatacatttattccaccttggattatcagccgtatatgtgcattgatg |
43559349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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