View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_15 (Length: 289)
Name: NF14434_low_15
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 33763297 - 33763553
Alignment:
| Q |
17 |
ggtctattttaagaaacaaatattcatcatggaacttttagatttgttgtatatctgaaccattggttggttttccattgtgtaggtctatttcaagaaa |
116 |
Q |
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| T |
33763297 |
ggtctattttaagaaacaaatattcatcatggaacttttagatttgttgtatatctgaaccattggttggttttccattgtgtaggtctatttcaagaaa |
33763396 |
T |
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| Q |
117 |
caaatatttatcatgaaactttgaagagttgaggcatcagtatatattactctgaccagctctctagctatatctccaccaccaacttcagcaggtgttg |
216 |
Q |
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| T |
33763397 |
caaatatttatcatgaaactttgaagagttgaggcatcagtatatattactctggccaactctctagctatatctccaccaccaacttcagcaggtgttg |
33763496 |
T |
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| Q |
217 |
gtgcttgtcattctggtccaaaattttgtttggacagactcctatctcttgaccggc |
273 |
Q |
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| T |
33763497 |
gtgcttgtcattctggtccaaaattttgtttggacagactcctatttcttgtccggc |
33763553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 33763248 - 33763334
Alignment:
| Q |
52 |
ttttagatttgttgtatatctgaaccattggttggttttccattgtgtaggtctatttcaagaaacaaatatttatcatgaaacttt |
138 |
Q |
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| T |
33763248 |
ttttagttttgttgtatatctgaaccattggttggttatcaattgtgtaggtctattttaagaaacaaatattcatcatggaacttt |
33763334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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