View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14434_low_16 (Length: 259)

Name: NF14434_low_16
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14434_low_16
NF14434_low_16
[»] chr5 (2 HSPs)
chr5 (111-252)||(39679239-39679380)
chr5 (210-247)||(3936968-3937005)
[»] chr6 (1 HSPs)
chr6 (191-247)||(20391577-20391635)
[»] chr3 (1 HSPs)
chr3 (210-247)||(43733707-43733744)
[»] chr8 (1 HSPs)
chr8 (210-247)||(36588607-36588644)
[»] chr4 (2 HSPs)
chr4 (210-247)||(45618674-45618711)
chr4 (210-247)||(40199318-40199355)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 39679380 - 39679239
Alignment:
Q  111 aggggatgtgaaacgtggaggaatgtgattggatgagagtaatggagtggcggcgtggttggagttttgtgtgttgcgtgggagaaatggtgtgtgaggg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39679380 aggggatgtgaaacgtggaggaatgtgattggatgagagtaatggagtggcggcgtggttggagttttgtgtgttgcgtgggagaaatggtgtgtgagag 39679281  T
Q  211 tggatggatgaggatgaaggaaaaaatggtgaagatgatgat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39679280 tggatggatgaggatgaaggaaaaaatggtgaagatgatgat 39679239  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 3937005 - 3936968
Alignment:
Q  210 gtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3937005 gtggatggatgagggtgaaggaaaaaatggtgaagatg 3936968  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 20391635 - 20391577
Alignment:
Q  191 ggagaaatggtgtg--tgagggtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    ||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||    
T  20391635 ggagaaatggtgtgagtgtgagtggatggatgaggatgaaggaaaaaatggtgaagatg 20391577  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 43733707 - 43733744
Alignment:
Q  210 gtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43733707 gtggatggatgaggatgaaggaaaaaatggtgaagatg 43733744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 36588644 - 36588607
Alignment:
Q  210 gtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36588644 gtggatggatgagggtgaaggaaaaaatggtgaagatg 36588607  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 45618711 - 45618674
Alignment:
Q  210 gtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  45618711 gtggatggatgagggtgaaggaaaaaatggtgaagatg 45618674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 40199318 - 40199355
Alignment:
Q  210 gtggatggatgaggatgaaggaaaaaatggtgaagatg 247  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  40199318 gtggatggatgaggatgaaggaaataatggtgatgatg 40199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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