View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14434_low_17 (Length: 214)

Name: NF14434_low_17
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14434_low_17
NF14434_low_17
[»] chr2 (4 HSPs)
chr2 (2-214)||(34562919-34563131)
chr2 (3-180)||(34571777-34571954)
chr2 (81-171)||(34579224-34579314)
chr2 (81-171)||(34584973-34585063)
[»] chr8 (6 HSPs)
chr8 (93-156)||(25865440-25865503)
chr8 (95-156)||(41943686-41943747)
chr8 (98-170)||(26591913-26591985)
chr8 (100-146)||(38799242-38799288)
chr8 (100-146)||(38822229-38822275)
chr8 (99-143)||(43480012-43480056)
[»] chr4 (1 HSPs)
chr4 (96-156)||(24860289-24860349)
[»] chr5 (2 HSPs)
chr5 (100-156)||(12531239-12531295)
chr5 (100-156)||(12547324-12547380)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 34563131 - 34562919
Alignment:
Q  2 tctatataaatgtttcatttcattcactattctcattacaannnnnnnctttcaagacactttcaaaaccaaagcagttttcttctatcttcgattcaat 101  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  34563131 tctatataaatgtttcatttcattcactattctcattacaatttttttctttcaagacactttcaaaaccaaagcagttttcttctatttttgattcaat 34563032  T
Q  102 ggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaaccaaagggcgga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34563031 ggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaaccaaagggagga 34562932  T
Q  202 cttaagagacctc 214  Q
    |||||||||||||    
T  34562931 cttaagagacctc 34562919  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 34571954 - 34571777
Alignment:
Q  3 ctatataaatgtttcatttcattcactattctcattacaannnnnnnctttcaagacactttcaaaaccaaagcagttttcttctatcttcgattcaatg 102  Q
    |||||||||| ||||||||||||||| ||||| |||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34571954 ctatataaatctttcatttcattcacaattcttattacaattttttcctttcaagacactttcaaaaccaaagcagttttcttctattttcgattcaatg 34571855  T
Q  103 gcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||    
T  34571854 gcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccacaaaggttgctcgt 34571777  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 34579314 - 34579224
Alignment:
Q  81 ttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaag 171  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||    
T  34579314 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaag 34579224  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 34585063 - 34584973
Alignment:
Q  81 ttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaag 171  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||    
T  34585063 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaag 34584973  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 25865440 - 25865503
Alignment:
Q  93 cgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 156  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  25865440 cgattcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaag 25865503  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 41943686 - 41943747
Alignment:
Q  95 attcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 156  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  41943686 attcaatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaag 41943747  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 26591913 - 26591985
Alignment:
Q  98 caatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaa 170  Q
    ||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||| ||||  |||||| |||||    
T  26591913 caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaa 26591985  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 38799242 - 38799288
Alignment:
Q  100 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 146  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38799288  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 38822275 - 38822229
Alignment:
Q  100 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 146  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38822229  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 43480056 - 43480012
Alignment:
Q  99 aatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaa 143  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||    
T  43480056 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaa 43480012  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 24860289 - 24860349
Alignment:
Q  96 ttcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 156  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || || ||||||| ||||    
T  24860289 ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaag 24860349  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 12531239 - 12531295
Alignment:
Q  100 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 156  Q
    ||||| ||||| |||||||| ||||||||||||||||| || || ||||||| ||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaag 12531295  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 12547380 - 12547324
Alignment:
Q  100 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 156  Q
    ||||| ||||| |||||||| ||||||||||||||||| || || ||||||| ||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaag 12547324  T

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