View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14434_low_3 (Length: 498)
Name: NF14434_low_3
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 43 - 422
Target Start/End: Complemental strand, 31202726 - 31202354
Alignment:
| Q |
43 |
tattgagaggattttaaatggagataagtcatataaagatcataccataattttaattttatattagactctatcgttttcttgttttcatgatatctta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202726 |
tattgagaggattttaaatggagataagtcatataaagatcataccataattttaattttatattagactctatcgttttcttgttttcatgatatctta |
31202627 |
T |
|
| Q |
143 |
tacaaattccgaactagtgaatagtgatgcaactttttacttaccctcaatacttataaaataacattcaataaataaagcttccattcacacttgaaga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202626 |
tacaaattccgaactagtgaatagtgatgcaattttttacttaccctcaatacttataaaataacattcaataaataaagcttccattcacacttgaaga |
31202527 |
T |
|
| Q |
243 |
acatgattctttcttgatttattttgtttcaacatggagtaagcatcaggctttgaatcagaatagaagacacaagagcttcaaaagtaatagttgatag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202526 |
acatgattctttcttgatttattttgtttcaacatggagtaagcatcaggctttgaatcagaatagaagacacaagagcttcaaaagtaatagttgatag |
31202427 |
T |
|
| Q |
343 |
aagtgacaagtgacaacattacattattaagcatatattctaatctgacaactaaaatgaacagagccatttattcctta |
422 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202426 |
aagtg-------acaacattacattattaagcatatattctaatctgacaactaaaatgaacagagccatttattcctta |
31202354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 31215836 - 31215684
Alignment:
| Q |
211 |
caataaataaagcttccattcacacttgaagaa----catgattctttcttgatttattttgtttcaacatggagtaagcatcaggctttgaatcagaat |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
31215836 |
caataaataaagcatccattcacacttgaagaaagaacatgattctttcttgatttcttttgtttcaacatgcagtaaacatcaggctttgaatcagaat |
31215737 |
T |
|
| Q |
307 |
agaagacacaagagcttcaaaagtaatagttgatagaagtgacaagtgacaac |
359 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
31215736 |
agaaaacacaagagcttcaaaagtaagagttgatagaagtgataagtgacaac |
31215684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 31215690 - 31215599
Alignment:
| Q |
388 |
tgacaactaaaatgaacagagccatttattccttaagttcacaggtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgc |
479 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31215690 |
tgacaactcaaatgaacagagccatttattccttaagtccacaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgc |
31215599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 31202355 - 31202317
Alignment:
| Q |
441 |
tatttacaccctctaaataagaaaagaatatatgcatgc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202355 |
tatttacaccctctaaataagaaaagaatatatgcatgc |
31202317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 13606402 - 13606136
Alignment:
| Q |
45 |
ttgagaggattttaaatggagataagtcatataaagatcataccataattttaattttatattagactctatcg-ttttcttgttttcatgatatcttat |
143 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||| |
|
|
| T |
13606402 |
ttgaaaggattttcaatggagacaagtcatataaagatcataccataattttaattttatat--gaatatatcgcttttcttgttttcatgatatcttat |
13606305 |
T |
|
| Q |
144 |
acaaattccgaactagtgaatagtgatgcaactttttacttaccctcaatacttataaaataaca--------ttcaataaataaagcttccattcacac |
235 |
Q |
| |
|
||||||| |||| | |||||||||| ||||| ||||||||||| ||||| |||| || | ||||||||||||||| ||||||||||| |
|
|
| T |
13606304 |
acaaattacgaa-------agagtgatgcaattttttccttaccctcaaaacttaaaaaaaaaaaaaaaaactttcaataaataaagcatccattcacac |
13606212 |
T |
|
| Q |
236 |
ttgaagaacatgattctttcttgatttattttgtttcaacatggagtaagcatcaggctttgaatcagaatagaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13606211 |
ttgaagaacatgattctttcttgatttattttgtttcaacatggagtaagcagcaggctttgaatcagaatagaag |
13606136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 13606136 - 13606089
Alignment:
| Q |
432 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13606136 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgc |
13606089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University