View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_4 (Length: 473)
Name: NF14434_low_4
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 244 - 473
Target Start/End: Complemental strand, 14568567 - 14568338
Alignment:
| Q |
244 |
gttgatctgtagtataacttgatatttgacttgactaattattttcactcgtttcacttctacagaaagagacaaaacttgacagtagggactctgtcca |
343 |
Q |
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| T |
14568567 |
gttgatatgtagtataacttggtatttgacttgactaattattttcactcatttcacttttacagaaagaaacaaaacttcatattagggattctgtcca |
14568468 |
T |
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| Q |
344 |
tggtgcagatggacttggcaaccaaaatttcccaccaccaaacgggaaacccattgaagaatcagctgcttcttttttagttaaccaagcaaaagctaac |
443 |
Q |
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| T |
14568467 |
tggtgcagatggacttggcaaccaaaattttccaccaccaaatggaaaaccccttgaagaatcagctgctgctttttttgttaaccaagcaaaagctaac |
14568368 |
T |
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| Q |
444 |
cgtggaaaaaccacggttgtggcattaggt |
473 |
Q |
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| T |
14568367 |
cgtggaaaaatcacggttgtggcattaggt |
14568338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 14576176 - 14576045
Alignment:
| Q |
338 |
tgtccatggtgcagatggacttggcaaccaaaatttcccaccaccaaacgggaaacccattgaagaatcagctgcttcttttttagttaaccaagcaaaa |
437 |
Q |
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| T |
14576176 |
tgtccatggtgcagatggacttggcaaccaaaattttccaccaccaaatgggaaacccattgaagaatcagctgcttcttttttggttaaccaagcaaaa |
14576077 |
T |
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| Q |
438 |
gctaaccgtggaaaaaccacggttgtggcatt |
469 |
Q |
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| T |
14576076 |
gctaaccccggaaaaatcactgtcgtggcatt |
14576045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 14568738 - 14568649
Alignment:
| Q |
20 |
ctttagattaaagacatggtcagtgtcgtgacacatgtggatgtggttacactcaatcatttattattggtgtcaatgtgtcagtttctgtgtcgt |
115 |
Q |
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| T |
14568738 |
ctttagattaaagacatgtccagtgtcgggaaacatgtgg------ttacactcaatcatttattattggtgtcaacgtgtcagattctgtgtcgt |
14568649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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