View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_5 (Length: 431)
Name: NF14434_low_5
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 157 - 417
Target Start/End: Complemental strand, 29367845 - 29367585
Alignment:
| Q |
157 |
gacagacacagtgcccaacatgcttaacacttaaccctatagcgcacaagcatactacacagccattcaacaggtcagcaatataacaggagccatttct |
256 |
Q |
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| T |
29367845 |
gacaaacacagtgcccaacatgcttaacacttaaccctatagcgcacaagcatactacacagccattcaacaggtcagcaatataacaggagccatttct |
29367746 |
T |
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| Q |
257 |
tatagtaaaactgcctaactagataggtaaagcaaggatgaaaacagaatcagaactatgcaatatgttcaatgtttgtcagtagctaaaaaccacgtga |
356 |
Q |
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| T |
29367745 |
tataataaaactgcctaactagataggtaaagcaaggatgaaaacagaatcagaactatgcaatatgttcaatgtttgacagtagctaaaaaccacgtga |
29367646 |
T |
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| Q |
357 |
atcatcaactaatggcctgtttacttttggtgtttcttgtttccatttccacagaaaaaat |
417 |
Q |
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| T |
29367645 |
atcatcaactaatggcctgtttacttttggtgtttcttgttttcatttccacagaaaaaat |
29367585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 29367996 - 29367910
Alignment:
| Q |
6 |
cctcaatgaagatcacaacataaacatcataacataccaccttaagaatgttcaagttcaaaagagaaaccatccaagttgtgatcg |
92 |
Q |
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| T |
29367996 |
cctcaatgaagatcacaacataaacatcataacataccaccttaagaatgttcaagttcaaaagaggaaccatccaagttgtgatcg |
29367910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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