View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14434_low_7 (Length: 390)
Name: NF14434_low_7
Description: NF14434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14434_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 1582265 - 1582625
Alignment:
| Q |
13 |
cagagactatattgagaggttcaattccaggtaggggacaaaaagataaagatctacttacttgaaaaatgtctctgaccatgaatcaattttagcaaaa |
112 |
Q |
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| T |
1582265 |
cagagactatattgagaggttcaattccaggtaggggacaaaaagataaagatctacttacttgaaaaatgtctc-gaccatgaatcaattttagcaaaa |
1582363 |
T |
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| Q |
113 |
ccgtcgatgttggtgagcttcgctcgctcaaaaagttcttaaaccttgacaatatctacaaaagatataaggagaaattctatgtgacaacttcaacaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1582364 |
ccgtcgatgttggtgagcttcgctcgctcaaaaagttcttaaaccttgacaatatctacaaaagatataaggagaaattgtatgtgacaacttcaacaaa |
1582463 |
T |
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| Q |
213 |
acaaggaaggataatttataagttgaatcctctcggtgtctagggacaaaatcctggatgaatatgcctctgcgcacttcaaggaagctggtatcaaaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582464 |
acaaggaaggataatttataagttgaatcctctcggtgtctagggacaaaatcctggatgaatatgcctctgcgcacttcaaggaagctggtatcaaaat |
1582563 |
T |
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| Q |
313 |
tcataaaacaacaacacccaaaacaagtgtagacaagagaaagtattggttccgcaaaagtc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
1582564 |
tcataaaacaacaacacccaaaacaagtgtagacaagagaaagtattagttctgcaaaagtc |
1582625 |
T |
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