View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_12 (Length: 514)
Name: NF14435_high_12
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Original strand, 2874758 - 2875238
Alignment:
| Q |
13 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874758 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
2874857 |
T |
|
| Q |
113 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
212 |
Q |
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| T |
2874858 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
2874957 |
T |
|
| Q |
213 |
atgaaaagaaattcattcatttacctctttaagatggttcaagtgagttctagctttatttctataatatctgctttttgtttaacatgcatgcatggtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2874958 |
atgaaaagaaattcattcatttacctctttaagatggttcaagtgagttctagctttatttctataatatctactttttgtttaacatgcatgcatggtt |
2875057 |
T |
|
| Q |
313 |
tcaacttttttattttcttctctctctctatgatatttaggtttctataatggcaacaattactatgacactttttctgcgaacccatatgcacaaagaa |
412 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875058 |
tcaactttttcattttct--tctctctctatgatatttaggtttctataatggcaacaattactatgacactttttctgcgaacccatatgcacaaagaa |
2875155 |
T |
|
| Q |
413 |
acagtgattgatggacaaattcattttggtgctttatatttctcattgataatgctcatgtttaacggaactattgagcttac |
495 |
Q |
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| T |
2875156 |
acagtgattgatggacaaattcattttggtgctttatatttctcattgataatgctcatgtttaatggaactattgagcttac |
2875238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2884632 - 2884860
Alignment:
| Q |
19 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
118 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| |||||||| | || | ||||||||| | || | ||| ||||||| ||||||||||||||| |
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| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
|
| Q |
119 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
218 |
Q |
| |
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||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
|
| Q |
219 |
agaaattcattcatttacctctttaagat |
247 |
Q |
| |
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|||||||| || ||||| |||| ||||| |
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| T |
2884832 |
agaaattcctttgtttacatcttcaagat |
2884860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 2899928 - 2899700
Alignment:
| Q |
19 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
118 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| |||||||| | || | ||||||||| | || | | ||| ||||||| ||||||||||||||| |
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| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
119 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
218 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||| |
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| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
|
| Q |
219 |
agaaattcattcatttacctctttaagat |
247 |
Q |
| |
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|| ||||| || ||||| |||| ||||| |
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| T |
2899728 |
aggaattcctttgtttacatcttcaagat |
2899700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44236023 - 44235905
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44236023 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44235924 |
T |
|
| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
| |
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|||| |||||||||||||| |
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| T |
44235923 |
tgctcatgaaaagaaattc |
44235905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44213048 - 44212930
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44213048 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44212949 |
T |
|
| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
| |
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|||| |||||||| ||||| |
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|
| T |
44212948 |
tgctcatgaaaaggaattc |
44212930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44225209 - 44225091
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44225209 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44225110 |
T |
|
| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
| |
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|||| |||||||| ||||| |
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|
| T |
44225109 |
tgctcatgaaaaggaattc |
44225091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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