View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_17 (Length: 495)
Name: NF14435_high_17
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 49517597 - 49518075
Alignment:
| Q |
1 |
tgaaatgtacttttttcttcttttcccttctgctttaatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataa |
100 |
Q |
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| T |
49517597 |
tgaaatgtacttttttcttcttttcccttctgctttaatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataa |
49517696 |
T |
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| Q |
101 |
cagtgagactgatgatcagcttgatgagaaggctagaaaacaagatatgtatcttagtttggtctattcaggcaatggttcagatgaagatgctgaacat |
200 |
Q |
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| T |
49517697 |
cagtgagactgatgatcagcttgatgagaaggctagaaaacaagatatgtatcttagtttggtctattcaggcaatggttcaaatgaagatgctgaacat |
49517796 |
T |
|
| Q |
201 |
gacgctagccaagagatggaggtgaccttccattcaggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttggg |
300 |
Q |
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| T |
49517797 |
gacgctagccaagagatggaggtgaccttccattcaggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttggg |
49517896 |
T |
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| Q |
301 |
aagaatttcggaggaaaaggcgtgagaaaaagaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagc |
400 |
Q |
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| T |
49517897 |
aagaatttcggaggaaaaggcgtgagaaaaagaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagc |
49517996 |
T |
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| Q |
401 |
agatgagttcctcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataat |
479 |
Q |
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| T |
49517997 |
agatgagttcctcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataat |
49518075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 469
Target Start/End: Original strand, 27746983 - 27747440
Alignment:
| Q |
3 |
aaatgtacttttttcttcttttcccttctgctt-taatagcttgctcagttggaatagaaagaatacttggcttctgatgcgagtgaaagtgatgataac |
101 |
Q |
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||||||||||||| ||||||||||| | |||| ||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
27746983 |
aaatgtacttttt-cttcttttcccatatgctaataatagcttgctcagttagaatggaaagattacttggcttcggatgcgagtgaaagtgatgataac |
27747081 |
T |
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| Q |
102 |
agtgagactgatgatcagcttgatgagaaggctagaaaacaagatatgtatcttagtttggtctattcaggcaatggttcagatgaagatgctgaacatg |
201 |
Q |
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| T |
27747082 |
accgaggctgatgatcaacttgatgaaaaggctagaaaacaatctatatatcttaatttggtctattcgggcaatggttcagatgaagatgctgaacatg |
27747181 |
T |
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| Q |
202 |
acgctagccaagagatggaggtgaccttccattcaggattggaatgtctaaataaaaaattaacggaaaagaaggacaaaagatcggaaacagtttggga |
301 |
Q |
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| T |
27747182 |
acattggccaagagatggaggtgaccttccattcaggattggaaagtctaaataaaaaattaatggaaaagaaggataa------ggaaacagtttggga |
27747275 |
T |
|
| Q |
302 |
agaatttcggaggaaaaggcgtgagaaaaagaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagca |
401 |
Q |
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| T |
27747276 |
agcatctcgaaggaaaaggcatgagaaaaagaaggccaagaagaacaaatcgaagtattcatcagatgatgatagtgatcaacaagttattgaagcagca |
27747375 |
T |
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| Q |
402 |
gatgagttcctcattgaggaaccttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaa |
469 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||| |
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| T |
27747376 |
aatgagt---tcattgaggaacctagtgttaagaagaggaagaagacagaaaagagtaaaactgacaa |
27747440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 38527704 - 38527605
Alignment:
| Q |
266 |
ggaaaagaaggacaaaagatcggaaacagtttgggaagaatttcggaggaaaaggcgtgagaaaaagaaggccaagaaaaataaattgaagtattcatca |
365 |
Q |
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|||||||||||| |||| ||| ||||||||||||||||| || |||||||| |||||||||||||| |||| |||||| |||| ||| |||||||| |
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| T |
38527704 |
ggaaaagaaggataaaaaatcaagaacagtttgggaagaatgtctgaggaaaaaacgtgagaaaaagaaagccaggaaaaacaaatcaaagcattcatca |
38527605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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