View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_24 (Length: 434)
Name: NF14435_high_24
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 152 - 433
Target Start/End: Complemental strand, 34426443 - 34426162
Alignment:
| Q |
152 |
gatattattattacttcatgttaactcttttgagataatcttaatgtggattaaaatgcagtagatagcaatatcaatactacattatctgaatgagcac |
251 |
Q |
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| T |
34426443 |
gatattattattacttcatgttaactcttttgagataatcttaatgtggattaaaatgcagtagatagcaatatcaatactacattatctgaatgagcac |
34426344 |
T |
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| Q |
252 |
ccaggtgacatatttcatactgtatttttggatcatgttaaaaggccaattgtgaaatagttgtcctaagggtacggcaccaagacataaacataataat |
351 |
Q |
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| T |
34426343 |
ccaggtgacatatttcatactgtatttttggatcatgttaaaaggtcaattgtgaaatagttgtcctaagggtacggcaccaagacataaacataataat |
34426244 |
T |
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| Q |
352 |
tgtgtcctaaatttcattcttatacaaataatgatattgatgggttttaatatttgcattatcatgtgcaatgccccttttt |
433 |
Q |
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| T |
34426243 |
tgtgtcctaaatttcattcttatacaaataataatattgatgggttttaatatttgcattatcatgtgcaatgccccttttt |
34426162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 34426617 - 34426481
Alignment:
| Q |
16 |
gcaacaacatctatcattattcctgacatgtttttagcataggtagacagtagatgcttccttttataactagtaaattatcatctcatgactcatgctc |
115 |
Q |
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| T |
34426617 |
gcaacaacatctatcattattcttggcatgtttttagcatatgtaga-------tgcttccttttataactagtaaattatcatctcatgactcatgctc |
34426525 |
T |
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| Q |
116 |
tacttcatgtgaaactattctgaaaatcttctttttgatattat |
159 |
Q |
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| T |
34426524 |
tacttcatgtgaaactattctgaaaatcttctttttgatattat |
34426481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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