View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_25 (Length: 433)
Name: NF14435_high_25
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 11299335 - 11298933
Alignment:
| Q |
15 |
gaacaacaatggagggaagcaagtgtttgattcttcagccttggccacccttttgaaaggagtaagatcaacaattgaagtggaacaaaacaatgtcgtt |
114 |
Q |
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| T |
11299335 |
gaacaacaatggagggaagcaagtgtttgattcttcagccttggccacccttttgaaaggagtaagatcaacaattgatgtggaacaaaacaatgtcgtt |
11299236 |
T |
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| Q |
115 |
gttattgataaccaattgaatgaagaagaaaaaatgaaattggagaaattgcagcaaatcagaatcaaattcttgagactatttctaaggcttggtttga |
214 |
Q |
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| T |
11299235 |
gttgttgataaccaattgaatgaagaagaaaaaatgaaattggagaaattgcagcaaatcagaatcaaattcttgagactagttctaaggcttggtttga |
11299136 |
T |
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| Q |
215 |
ctacacaggaatcaattgcagcccaagtgcttcaaaggttaacccttattgctgctggaagggatccaagacaaactagtcaaatattcaatcttaatgc |
314 |
Q |
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| T |
11299135 |
ctacacaggaatcaattgcagcccaagtgcttcaaaggttaacccttattgcttctggaagggatccaagacaaactagtcaaatattcaatcttaatgc |
11299036 |
T |
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| Q |
315 |
tgctgaggaaagtgctttcaatcttgaagctaggggagaaattttgaaccattctttgaatgtactagttcttgggaaatcagttgtgggaaaaagtgct |
414 |
Q |
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| T |
11299035 |
tgctgaggaaagtgctttcaatcttgaagctaggggagaaattttgaaccattctttgaatgtactagttctcgggaaatcaggtgtgggaaaaagtgct |
11298936 |
T |
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| Q |
415 |
act |
417 |
Q |
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| T |
11298935 |
act |
11298933 |
T |
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