View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_27 (Length: 411)
Name: NF14435_high_27
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_27 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 254 - 411
Target Start/End: Original strand, 36064406 - 36064563
Alignment:
| Q |
254 |
gtgaaattgctaagcagatgcattttgagttcagtactcaaaagaaaagcagtgttgctgttagatcaccatttgatattgaaaatgggtttgatgatga |
353 |
Q |
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| T |
36064406 |
gtgaaattgctaagcagatgcattttgagttcagtactccaaagaaaagcagtgttgctgttagatcaccatttgatattgaaaatgggtttgatgatga |
36064505 |
T |
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| Q |
354 |
aattgaagctccaaatgcacctttgatgtcgaagaaatcgaagccaaggttgagtgct |
411 |
Q |
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| T |
36064506 |
aattgaagctccaaatgcacctttgatgtcgaagaaatcgaagccaaggttgagtgct |
36064563 |
T |
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Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36064170 - 36064278
Alignment:
| Q |
1 |
ttgcaggttagggttttatgtggtgtggatcatgatgatttggaacagctttttaatgtatctacaacgattagagaagcagtaagtgttattctatata |
100 |
Q |
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| T |
36064170 |
ttgcaggttagggttttatgtggtgtggatcatgatgatttggaacagctttttaatgtatctacaacgattaaagaagcagtaagtgttattctatata |
36064269 |
T |
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| Q |
101 |
aatcaattt |
109 |
Q |
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| T |
36064270 |
aatcaattt |
36064278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 156844 - 156896
Alignment:
| Q |
320 |
caccatttgatattgaaaatgggtttgatgatgaaattgaagctccaaatgca |
372 |
Q |
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| T |
156844 |
caccttttgatatacaaaatgggtttgataatgaaattgaagctacaattgca |
156896 |
T |
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