View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_28 (Length: 409)
Name: NF14435_high_28
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 6521502 - 6521719
Alignment:
| Q |
8 |
agcagagattgaagtgtgaatggttatgatattttggaagaaacttgtaagaaagaaaaggatataatatattgatgataaattaagtggcttttatatt |
107 |
Q |
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| T |
6521502 |
agcagagattgaagtgtgaatggttatgatattttggaagaaacttgtaagaaagaaaaggatataatatattgatgataaattaagtggcttttatatt |
6521601 |
T |
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| Q |
108 |
gattaattcatattccaacaagtttcatttttataattgtagtatttagannnnnnnnnnctagtttatcttagtactactttctacttctgctatattt |
207 |
Q |
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| T |
6521602 |
gcttaattcatattccaacaagtttcatttttataattgtagtatttaga-tttttttttctagtttatcttagtactactttctacttctgctatattt |
6521700 |
T |
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| Q |
208 |
ctcagtcaatttgtataac |
226 |
Q |
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||||||||||||||||||| |
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| T |
6521701 |
ctcagtcaatttgtataac |
6521719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 244 - 390
Target Start/End: Original strand, 6522690 - 6522836
Alignment:
| Q |
244 |
aatgcacttatccttcaaaacgttatttcatcaaaattctaacacatcagacacaagcactggactagtcgtacaaattaaaaatgactgcaaagctctt |
343 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6522690 |
aatgcactaatccttcaaaacattatttcatcaaaattctaagacatcagacacaagcactggactagtcgtaccaattaaaaatgactgcaaagctctt |
6522789 |
T |
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| Q |
344 |
aaataataataagttaagttattaattgcaagggacaatatcattgt |
390 |
Q |
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| T |
6522790 |
aaataataataagtcaagttattaattgcaagggacaaaatcattgt |
6522836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 13064213 - 13064087
Alignment:
| Q |
24 |
tgaatggttatgatattttggaagaaacttgtaagaaagaaaaggatataatatattgatgataaattaagtggcttttatattgattaattcatattcc |
123 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||| |||| ||||||||| |
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| T |
13064213 |
tgaatggttgtaatattttggaagaaacttgtaagaaagaaaaggatgta-----ttcatgataaattaagtggcttgtatattgcttaagtcatattcc |
13064119 |
T |
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| Q |
124 |
aacaagtttcatttttataattgtagtattta |
155 |
Q |
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| T |
13064118 |
aacaagtttcatttttataattgtagtattta |
13064087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 13070888 - 13070843
Alignment:
| Q |
110 |
ttaattcatattccaacaagtttcatttttataattgtagtattta |
155 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070888 |
ttaagtcatattccaacaagtttcatttttataattgtagtattta |
13070843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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