View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_32 (Length: 388)
Name: NF14435_high_32
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 4181503 - 4181129
Alignment:
| Q |
1 |
aaatgataaccctttcatttttgaacgataaaaagtttaaatgaattaaatgtcgagactcgttagtaggaaaatatttaagattcattggttggggaaa |
100 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4181503 |
aaataataacccttttatttttgaacgataaaaagtttagatgaattaaatgtcgagactcgttagtaggaaaatatttaagattcattggttggggaaa |
4181404 |
T |
|
| Q |
101 |
gacatnnnnnnnnn--tccaccttatttaagaaagtgatttctatttgaatgataagagaatgtttatgattaattatcttttttaaaaaa-gtatttta |
197 |
Q |
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| T |
4181403 |
gacatcaaaaaaaaaatccaccttatttaagaaagtgatttctcattgaatgataagagaatgtttatgattaaatatcttttaaaaaaaaagtatttta |
4181304 |
T |
|
| Q |
198 |
acaatatgaagaaaaaattataacttatttaagtcctctaaaattattttccaatata-nnnnnnnnagtttctctaaattagaagaattttggataatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4181303 |
acaatatgaagaaaaaattataacttatttaagtcctctaaaattattttccaatatatttttttttagtttctctaaattagaagaattttggataatg |
4181204 |
T |
|
| Q |
297 |
aattataaagataaataaatcctcaaaaactccttattcctttcacttcacctttactttctccaaagcactcac |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4181203 |
aattataaagataaataaatcctcaaaaactccttattcctttcacttcacctttactttctctaaagcactcac |
4181129 |
T |
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