View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_high_36 (Length: 377)
Name: NF14435_high_36
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 359
Target Start/End: Complemental strand, 5159762 - 5159408
Alignment:
| Q |
6 |
aggagcacagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagnnn |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159762 |
aggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagttt |
5159663 |
T |
|
| Q |
106 |
nnnncccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159662 |
ttttcccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgatt |
5159563 |
T |
|
| Q |
206 |
agtttggttggtaggtattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaa-ataaagtttagataagggaaaacataccatg |
304 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5159562 |
agtttggttggtagttattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaacataccatg |
5159463 |
T |
|
| Q |
305 |
gagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgtct |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159462 |
gagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgtct |
5159408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University