View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_45 (Length: 329)
Name: NF14435_high_45
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 36050967 - 36051284
Alignment:
| Q |
1 |
ggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactgatctctta |
100 |
Q |
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| T |
36050967 |
ggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactgatctctta |
36051066 |
T |
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| Q |
101 |
tggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaaacatgtgaatcctcaaagttggaggtga---agccttccc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
36051067 |
tggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaagcatgtgaatcctcaaagttggaggtgaagcagccttccc |
36051166 |
T |
|
| Q |
198 |
gagtttccgattgtgttgttgatctcgtactagacataccaggtgaacacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051167 |
gagtttccgattgtgttgttgatctcgtactagacataccaggtgaacacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcac |
36051266 |
T |
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| Q |
298 |
tcacgattatgttgattc |
315 |
Q |
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|||||||||||||||||| |
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| T |
36051267 |
tcacgattatgttgattc |
36051284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 44762261 - 44762430
Alignment:
| Q |
1 |
ggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactgatctctta |
100 |
Q |
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||||||| | || ||||| |||| ||||||| ||||||| | |||||||||| |||||| | | || ||||||||||| |||||||||| ||| || |
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| T |
44762261 |
ggctgcactggccatgcgcggtgaagctctcaaatggtggctatggtggtctcaccgtcactcacgatccaattgggacacttttaccactgctcttttg |
44762360 |
T |
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| Q |
101 |
tggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaaacatgtgaat |
170 |
Q |
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| T |
44762361 |
tggcgtttcaagcatgaatggcgtcatctcttaccggtgttagaggaggaaacagaggaagcttgtgaat |
44762430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 30453024 - 30453113
Alignment:
| Q |
34 |
atggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactgatctcttatggcgctttaagcctgaatggcg |
123 |
Q |
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| T |
30453024 |
atggtggttgtggtggtcgccccgtcacccgcaatcaaattgggacacattcaccacggcactgttttggcgcttcaagccggaatggcg |
30453113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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