View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_high_60 (Length: 260)

Name: NF14435_high_60
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_high_60
NF14435_high_60
[»] chr6 (4 HSPs)
chr6 (168-241)||(5013883-5013956)
chr6 (176-236)||(16693216-16693276)
chr6 (176-219)||(18819506-18819549)
chr6 (176-219)||(24904412-24904455)
[»] chr1 (2 HSPs)
chr1 (168-236)||(18431441-18431509)
chr1 (176-236)||(22788196-22788256)
[»] chr8 (3 HSPs)
chr8 (168-236)||(11463697-11463765)
chr8 (176-236)||(28535410-28535470)
chr8 (176-219)||(45483671-45483714)
[»] chr5 (3 HSPs)
chr5 (168-236)||(424571-424639)
chr5 (168-236)||(18113566-18113634)
chr5 (177-219)||(25634224-25634266)
[»] chr4 (2 HSPs)
chr4 (168-236)||(8903475-8903543)
chr4 (168-236)||(45067540-45067608)
[»] chr7 (2 HSPs)
chr7 (174-236)||(46437561-46437623)
chr7 (176-219)||(39780514-39780557)
[»] chr3 (6 HSPs)
chr3 (176-236)||(26555723-26555783)
chr3 (176-236)||(52118542-52118602)
chr3 (176-219)||(26905744-26905787)
chr3 (176-219)||(36615253-36615296)
chr3 (176-219)||(25069548-25069591)
chr3 (176-219)||(28211463-28211506)
[»] chr2 (2 HSPs)
chr2 (168-223)||(16916187-16916242)
chr2 (177-219)||(4076365-4076407)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 5013956 - 5013883
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtgaaata 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5013956 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtgaaata 5013883  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 16693216 - 16693276
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  16693216 cttccactctcatcagtcagcagcatcattttctctcttcactccttcttcaaatctagtg 16693276  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 18819549 - 18819506
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  18819549 cttccactctcatcagtcagcaacataattttctctcttcactc 18819506  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 24904455 - 24904412
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||    
T  24904455 cttccactctcatcaatcagcaacataattttctctcttcactc 24904412  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 18431509 - 18431441
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18431509 ctctccttcttccactctcatcagtcagcaacatcattttctctcttcactccttcttcaaatctagtg 18431441  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 22788256 - 22788196
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  22788256 cttccactctcatcagtcagcagcatcattttctctcttcactccttcttcaattctagtg 22788196  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 11463765 - 11463697
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  11463765 ctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtg 11463697  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 28535410 - 28535470
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28535410 cttccactctcatcagtcagcagcatcattttctctcttcactccttcttcaaatctagtg 28535470  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 45483671 - 45483714
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  45483671 cttccactctcatcagtcagcaacataattttctctcttcactc 45483714  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 424639 - 424571
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  424639 ctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtg 424571  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 18113634 - 18113566
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| |||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18113634 ctctccttcttcccctctcagcagtcagcaacatcattttctctcttcactccttcttcaaatctagtg 18113566  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 25634266 - 25634224
Alignment:
Q  177 ttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  25634266 ttccactctcatcagtcagcaacataattttctctcttcactc 25634224  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 8903475 - 8903543
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  8903475 ctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtg 8903543  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 45067608 - 45067540
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||| ||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||    
T  45067608 ctctccttcttccactctcagcagtcagcaacatcattttctctcgtcactcctttttcaaatctagtg 45067540  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 46437561 - 46437623
Alignment:
Q  174 ttcttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  46437561 ttcttccactctcatcaatcagcagcatcattttctctcttcactccttcttcaaatctagtg 46437623  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 39780514 - 39780557
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||    
T  39780514 cttccactctcatcagtcaacaacataattttctctcttcactc 39780557  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 26555723 - 26555783
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  26555723 cttccactctcatcagtcagcatcatcattttctctcttcactccttcttcaattctagtg 26555783  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 52118542 - 52118602
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactccttcttcaaatctagtg 236  Q
    ||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |||||||    
T  52118542 cttccactctcgtcggtcagcagcatcattttctctcttcactccttcttcaattctagtg 52118602  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 26905787 - 26905744
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  26905787 cttccactctcatcagtcagcaacataattttctctcttcactc 26905744  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 36615253 - 36615296
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  36615253 cttccactctcatcagtcagcaacataattttctctcttcactc 36615296  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 25069548 - 25069591
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||    
T  25069548 cttccactctcatcagtcaacaacataattttctctcttcactc 25069591  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 28211506 - 28211463
Alignment:
Q  176 cttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  28211506 cttccactctcataagtcagcaacataattttctctcttcactc 28211463  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 16916242 - 16916187
Alignment:
Q  168 ctcttcttcttccactctcatcagtcagcaacatcattttctatcttcactccttc 223  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  16916242 ctctccttcttccactctcatcagtcagcaacaacattttctctcttcactccttc 16916187  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 4076407 - 4076365
Alignment:
Q  177 ttccactctcatcagtcagcaacatcattttctatcttcactc 219  Q
    |||||||||||||||||| |||||| ||||||| |||||||||    
T  4076407 ttccactctcatcagtcaacaacataattttctctcttcactc 4076365  T

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