View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_61 (Length: 260)
Name: NF14435_high_61
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 46631177 - 46630948
Alignment:
| Q |
20 |
agtatgtctattcatttggcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcaga |
119 |
Q |
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| T |
46631177 |
agtatgtctattcatttggcagctttagaacacaatttgcaagtaaggcaagaggagcatcga---tacattcaaaaccaatttgtttacaacagtcaga |
46631081 |
T |
|
| Q |
120 |
aactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46631080 |
aactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccttta |
46630981 |
T |
|
| Q |
220 |
ccacctccattcaaatgcttttcttcctatgct |
252 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46630980 |
ccacctccattcaaatgcttttcttcctatgct |
46630948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 46172622 - 46172828
Alignment:
| Q |
38 |
gcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagat |
137 |
Q |
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||||| ||||||||||||||||||| ||||| ||| ||||||| | ||||||||| ||||||||||| ||| || | | || ||||||||||||||| |
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| T |
46172622 |
gcagccttagaacacaatttgcaagtcaggcaggagaagcatcggc---acattcaaagccaatttgtttccaaaag-ctggaattccatgatgacagat |
46172717 |
T |
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| Q |
138 |
agc-aggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagct---accattaccacctccattcaa |
233 |
Q |
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| T |
46172718 |
aggtagaaagcttaaaaa-taaccactattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaa |
46172816 |
T |
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| Q |
234 |
atgcttttcttc |
245 |
Q |
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|||||||||||| |
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| T |
46172817 |
atgcttttcttc |
46172828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 46620503 - 46620454
Alignment:
| Q |
164 |
attgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
213 |
Q |
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| T |
46620503 |
attgacctctactctttaacttaaccaattggcttgcaaatatctagcta |
46620454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 15767753 - 15767976
Alignment:
| Q |
20 |
agtatgtctattcatttggcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcaga |
119 |
Q |
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|
|||||||||| |||||||||||| ||||||| ||||||||||| |||||||||| ||||| | ||||||||||||||||||| |||||| ||||||| |
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| T |
15767753 |
agtatgtctagtcatttggcagccttagaactcaatttgcaagtaaggcaagagaagcattaa---tacattcaaaaccaatttgattacaaaagtcaga |
15767849 |
T |
|
| Q |
120 |
aactccatgatgacagatag-caggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccatt |
218 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||| || |||||| || | |
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| T |
15767850 |
aactccatgatgacagataggcaggtaacttaaaaaattaccactattgacctctactctttaacttaaccaagtagcttgaaaacatttagctaacact |
15767949 |
T |
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| Q |
219 |
accacctccattcaaatgcttttcttc |
245 |
Q |
| |
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|| | ||||| ||||||| |||||||| |
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| T |
15767950 |
acgatctccaatcaaatgtttttcttc |
15767976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 18373693 - 18373856
Alignment:
| Q |
86 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatag-caggtagcttaaaaaattacaacaattgacctctactcttta |
181 |
Q |
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||||||| |||||| ||||||| ||| |||| |||||||||||||| ||||||| || ||| ||||||| | | ||| |||||||||||||||||| |
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| T |
18373693 |
tacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactcttta |
18373792 |
T |
|
| Q |
182 |
acttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
245 |
Q |
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|||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||| |||||||| |
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| T |
18373793 |
acttaaccaattggcttgcaaatatctagctaacactaccatctccattgaaatgtttttcttc |
18373856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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