View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_62 (Length: 258)
Name: NF14435_high_62
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 37893806 - 37893979
Alignment:
| Q |
62 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
161 |
Q |
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| T |
37893806 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
37893905 |
T |
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| Q |
162 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctg |
235 |
Q |
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| T |
37893906 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagttgctg |
37893979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 37188904 - 37189072
Alignment:
| Q |
62 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37188904 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaa |
37189003 |
T |
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| Q |
162 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagt |
230 |
Q |
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| T |
37189004 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgtgaataacaaagttgcatcaaaagt |
37189072 |
T |
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