View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_high_65 (Length: 250)

Name: NF14435_high_65
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_high_65
NF14435_high_65
[»] scaffold0655 (1 HSPs)
scaffold0655 (11-234)||(318-542)
[»] chr5 (4 HSPs)
chr5 (20-135)||(35304912-35305028)
chr5 (8-68)||(41949577-41949637)
chr5 (65-135)||(41949706-41949777)
chr5 (16-68)||(43233701-43233753)
[»] chr3 (2 HSPs)
chr3 (8-135)||(42656427-42656555)
chr3 (63-120)||(10745336-10745394)
[»] chr2 (1 HSPs)
chr2 (8-137)||(36316526-36316657)
[»] chr8 (2 HSPs)
chr8 (116-185)||(4677452-4677521)
chr8 (65-94)||(26175185-26175214)
[»] chr4 (3 HSPs)
chr4 (63-135)||(11814843-11814916)
chr4 (65-135)||(5444418-5444489)
chr4 (8-68)||(5444558-5444618)
[»] scaffold1412 (1 HSPs)
scaffold1412 (65-135)||(88-159)
[»] scaffold0263 (2 HSPs)
scaffold0263 (65-135)||(22624-22695)
scaffold0263 (8-68)||(22758-22818)
[»] scaffold0001 (1 HSPs)
scaffold0001 (65-135)||(144986-145057)
[»] chr6 (1 HSPs)
chr6 (65-135)||(6823360-6823431)
[»] chr1 (1 HSPs)
chr1 (65-135)||(9906158-9906230)
[»] chr7 (2 HSPs)
chr7 (65-135)||(34512548-34512619)
chr7 (8-68)||(7737147-7737207)


Alignment Details
Target: scaffold0655 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 542 - 318
Alignment:
Q  11 caaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccat 109  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  542 caaaggaaaatacaaggagagatgccggaaatacatcggccaagagaatagcaacaacgtttaaccaccatccggtggaagcaaacaaccacaaaaccat 443  T
Q  110 aaaagacacaacgcttgaccaccaagcaaaccacttggcagaagcacaacaaagagagagtaaggatatccaaaaacaacaatgatatccgaaggcaaca 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  442 aaaagacacaacgcttaaccaccaagcaaaccacttggcagaagcacaacaaagagagagtaagcatatccaaaaacaacaatgatatccgaaggcaact 343  T
Q  210 taactgcattacctcttgtccaaat 234  Q
    |||||||||||||||||||||||||    
T  342 taactgcattacctcttgtccaaat 318  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 35304912 - 35305028
Alignment:
Q  20 atactaggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacac 118  Q
    |||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  35304912 atacaaggaaagatgccggaaatacatcggccaagagaatagaaacaacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcac 35305011  T
Q  119 aacgcttgaccaccaag 135  Q
    ||||||| |||| ||||    
T  35305012 aacgcttaaccatcaag 35305028  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 41949577 - 41949637
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 68  Q
    ||||||| |||||||| |||| |||||||||||||| |||||||||||||| |||| ||||    
T  41949577 aagcaaatgaaaatacaaggaaagatgccggaaatatatcggccaagagaagagcagcaac 41949637  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 41949706 - 41949777
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||| ||||||||||||||||||||||| |||| | ||||| ||||||||| |||||||||| |||| ||||    
T  41949706 caacacttaaccaccatccggtagaagccaacatcgacaaagccataaaaggcacaacgcttaaccatcaag 41949777  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 43233753 - 43233701
Alignment:
Q  16 gaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 68  Q
    |||||||| |||| |||| ||||||||| |||| |||||||||||||||||||    
T  43233753 gaaaatacaaggaaagataccggaaatacatcgaccaagagaatagcaacaac 43233701  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 42656427 - 42656555
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-c 106  Q
    ||||||| |||||||| |||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  42656427 aagcaaatgaaaatacgaggaaagatgtcgggaatacatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagccaacaaccacaaagc 42656526  T
Q  107 cataaaagacacaacgcttgaccaccaag 135  Q
    |||||||| |||||| ||| |||| ||||    
T  42656527 cataaaaggcacaacacttaaccatcaag 42656555  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 10745394 - 10745336
Alignment:
Q  63 aacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaa 120  Q
    |||||||||||||||||||| ||||||||||| || | |||||  ||||||||||||||    
T  10745394 aacaacgcttaaccaccatctggtagaagcaagcaccaacaaagtcataaaagacacaa 10745336  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 36316526 - 36316657
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaacca-caaa- 105  Q
    ||||||| |||||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||     
T  36316526 aagcaaatgaaaatacaaggaaagatgctggaaatacactggccaagagaatagcaacaacgcttaaccaccatctggtagaagcaaacaaccaacaaag 36316625  T
Q  106 ccataaaagacacaacgcttgaccaccaagca 137  Q
    |||   ||| |||||||||| |||||||||||    
T  36316626 ccaattaaggcacaacgcttaaccaccaagca 36316657  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 4677521 - 4677452
Alignment:
Q  116 cacaacgcttgaccaccaagcaaaccacttggcagaagcacaacaaagagagagtaaggatatccaaaaa 185  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  4677521 cacaacgcttaaccaccaagcaaaccacttggcagaagcacaagaaaaagagaacaaggatatccaaaaa 4677452  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 26175214 - 26175185
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaa 94  Q
    ||||||||||||||||||||||||||||||    
T  26175214 caacgcttaaccaccatccggtagaagcaa 26175185  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 11814916 - 11814843
Alignment:
Q  63 aacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||  ||||||||||| ||| |||||| |||||||||||||||||||| |||| ||||    
T  11814916 aacaacgcttaaccaccatatggtagaagcaagcaagcacaaagccataaaagacacaacgcttaaccatcaag 11814843  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 5444489 - 5444418
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||||||||| |||| | ||||| ||||||||| |||||||||| |||| ||||    
T  5444489 caacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgcttaaccatcaag 5444418  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 5444618 - 5444558
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 68  Q
    ||||||| |||||||| || | |||||||||||||| |||||||||||| |||||||||||    
T  5444618 aagcaaatgaaaatacaagtaaagatgccggaaatacatcggccaagagcatagcaacaac 5444558  T

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Target: scaffold1412 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 88 - 159
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  88 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 159  T

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Target: scaffold0263 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 22695 - 22624
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||| ||||| |||| | ||||| |||||||||||||||||||| |||| ||||    
T  22695 caacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaaccatcaag 22624  T

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Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 22818 - 22758
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 68  Q
    ||||||| |||||||| |||  |||||||||||||| |||||||||||| |||||||||||    
T  22818 aagcaaatgaaaatacaaggtaagatgccggaaatacatcggccaagagcatagcaacaac 22758  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 144986 - 145057
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  144986 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 145057  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 6823360 - 6823431
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  6823360 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 6823431  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 9906158 - 9906230
Alignment:
Q  65 caacgcttaaccaccatccggtagaag-caaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    ||||||||||||||||||||||||||| ||| |||| ||||| || |||||| |||||||||| |||| ||||    
T  9906158 caacgcttaaccaccatccggtagaagccaatcaacaacaaagccttaaaaggcacaacgcttaaccatcaag 9906230  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 34512619 - 34512548
Alignment:
Q  65 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 135  Q
    |||||||||||||||||||||||||||| || |  |||||| ||||||||| || ||||||| |||| ||||    
T  34512619 caacgcttaaccaccatccggtagaagccaatattcacaaagccataaaaggcataacgcttaaccatcaag 34512548  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 7737207 - 7737147
Alignment:
Q  8 aagcaaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 68  Q
    ||||||| |||||||| | || |||||||||||||| |||| ||||||| |||| ||||||    
T  7737207 aagcaaatgaaaatacaaagaaagatgccggaaatacatcgaccaagagcatagaaacaac 7737147  T

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