View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_70 (Length: 244)
Name: NF14435_high_70
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 49517073 - 49516852
Alignment:
| Q |
18 |
atgaacaatgacttttgtttaatccaagattcttgtagttacttttcacaattgtggaccttattatgtttaacataatctattggcggatgctgctcca |
117 |
Q |
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| T |
49517073 |
atgaacaatgacttttgtttaatccaatactcttgtagttacttttcacaattgtggaccttattatgtttaacataatctattggtggatgctgctcca |
49516974 |
T |
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| Q |
118 |
gcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccattgaactgactccatcttgaagatttaccccaaggttaagcatacta |
217 |
Q |
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| T |
49516973 |
gcaaggatgcaacaacataattcctataggtaaaaagtatagtataatgaccattgaactgactccatcttgaagatttaccccaaggttaagcatacta |
49516874 |
T |
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| Q |
218 |
ttcacacaagtggtcatctgtg |
239 |
Q |
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| T |
49516873 |
ttcacacaagtggtcatctgtg |
49516852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 49515509 - 49515584
Alignment:
| Q |
105 |
ggatgctgctccagcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccattgaactgac |
180 |
Q |
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| T |
49515509 |
ggatgctgctccgacaagtatgcaacaacataattcatataagcaacaagtataatataatgaccatcaaactgac |
49515584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 22990259 - 22990312
Alignment:
| Q |
118 |
gcaaggatgcaacaacataattcctataggtaacaagtatagtataatgaccat |
171 |
Q |
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| T |
22990259 |
gcaaggatgcatcaacataactcatataggcaacaagtataatataattaccat |
22990312 |
T |
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