View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14435_high_74 (Length: 236)
Name: NF14435_high_74
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_74 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 55652185 - 55652294
Alignment:
| Q |
11 |
gtgagatgaaagtctattgcaattttccccattcatttaaag-atggagaaaaagaatttnnnnnnntatatatatttaaaggtagagatgtatgtggac |
109 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55652185 |
gtgacatgaaagtctgttgcaattttccccattcatttaaaggatggagaaaaagaatttaaaaaaatatatatatttaaaggtagagatgtatgtggac |
55652284 |
T |
|
| Q |
110 |
atttattcct |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
55652285 |
atttattcct |
55652294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 55652348 - 55652396
Alignment:
| Q |
172 |
agttatctccaaagaaggcaaatggatcctctaatgttgttataaaggg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55652348 |
agttatctccaaagaaggcaaatggatcctctaatgttgtaataaaggg |
55652396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University