View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_79 (Length: 218)
Name: NF14435_high_79
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 44884837 - 44885032
Alignment:
| Q |
4 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
103 |
Q |
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| T |
44884837 |
ggatgtcga-gaacatggtacaacgtctcaccccaaatgccaacaagatataccatctctctggtactcagaaatttgagctgccaaaagaggatgttaa |
44884935 |
T |
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| Q |
104 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcatt |
200 |
Q |
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| T |
44884936 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcatt |
44885032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 44841320 - 44841515
Alignment:
| Q |
4 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
103 |
Q |
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| T |
44841320 |
ggatgtcga-gaacattgtacaacgcctcaccccaaatgccaacaagatataccatctctctggtactctgaaatttgagctgccaaaagaggatgttaa |
44841418 |
T |
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| Q |
104 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcatt |
200 |
Q |
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| T |
44841419 |
aatagcaaatgtatttcaagctgttgaagttgcaaaaagaaacttcaccgttattgcatggggtttatctgacacaacattggaagatgtcttcatt |
44841515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 44852658 - 44852853
Alignment:
| Q |
4 |
ggatgtcgaagaatatggtacaacgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaa |
103 |
Q |
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| T |
44852658 |
ggatgtcga-gaacatggtacaacggctcaccccaaatgccaacaagatataccatctctctggtactcaaaaatttgagctgccaaaagaggaaattaa |
44852756 |
T |
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| Q |
104 |
aatagcgaacatattccaagctgttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcatt |
200 |
Q |
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| T |
44852757 |
aatggcgaatgtattccgagctattgaagctgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattagaagacgtcttcatt |
44852853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 44901819 - 44901985
Alignment:
| Q |
30 |
ctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctgttg |
129 |
Q |
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| T |
44901819 |
ctcaccccaaatgccaacaagatataccatctctctggtactcagaaatttgagcttccaaaagaggatgttaaaatagcaaatgtatttcaagctgttg |
44901918 |
T |
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| Q |
130 |
aagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtctt |
196 |
Q |
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| T |
44901919 |
aagttgcaaaaagaaactttactgttttcgcatggggtttagctgacaccacattagaagatgtctt |
44901985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 44867123 - 44867292
Alignment:
| Q |
27 |
cgtctcaccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctg |
126 |
Q |
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| T |
44867123 |
cgtctcaccccaaatgccaacaggatataccgtctctctggcactcagaagttcgagctgccaaaaaaggaagttaaaatagcgaatgtattccaagctg |
44867222 |
T |
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| Q |
127 |
ttgaagttgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtctt |
196 |
Q |
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| T |
44867223 |
ttgaagttgcaaaaagaaacttcactgtttttgcatggggtttagccgacaccacattagaagatgtctt |
44867292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 12923056 - 12922890
Alignment:
| Q |
34 |
ccccaaatgccaacaagatataccatctctctgggactcagaaatttgagctgccaaaagaggatgttaaaatagcgaacatattccaagctgttgaagt |
133 |
Q |
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| T |
12923056 |
ccccaaatgctaagaagatttaccatatctcaggaactcaaaagtttgagctaccaaaagatgaggttaaaatatctaatgtattccaagcagttgaaac |
12922957 |
T |
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| Q |
134 |
tgcaaaaagaaacttcactgttttcgcatggggtttatctgacaccacattggaagatgtcttcatt |
200 |
Q |
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|||||| ||||| ||| | |||| |||||||||||| |||||||||||||||||||||| |||||| |
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| T |
12922956 |
tgcaaagagaaatttcccagtttctgcatggggtttagctgacaccacattggaagatgtattcatt |
12922890 |
T |
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