View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_8 (Length: 532)
Name: NF14435_high_8
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 34756878 - 34756366
Alignment:
| Q |
1 |
aaaataatcccaaagatgatcatctaagcgggagatttatgatgtgttacattaaggtaaaaaatggaaaggctaatcacatgattggatttataaagtg |
100 |
Q |
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| T |
34756878 |
aaaataatcccaaagatgatcatctaagcgggagatttatgatgtgttacattaaggtaaaaaatggaaaggctaatcacatgattggatttataa-gtg |
34756780 |
T |
|
| Q |
101 |
agagagaacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatt |
200 |
Q |
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| T |
34756779 |
agagagaacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatt |
34756680 |
T |
|
| Q |
201 |
tccataaaagaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccattcagaccagtttgttgcaaaag |
300 |
Q |
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| T |
34756679 |
tccataaaagaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccatccagaccagtttgttgcaaaag |
34756580 |
T |
|
| Q |
301 |
gagaattgaccatgcacttgaagttgatatatgatattgcattgcttctnnnnnnnnttactcagacaaaggtaattcattttttgggcacaaagaaaat |
400 |
Q |
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| T |
34756579 |
gagaattgaccatgcacttgaagttgatatatgatattgcattgcttctaaaaaaaattactcagacaaaggtaattcattttttgggcacagagaaaat |
34756480 |
T |
|
| Q |
401 |
gaaggactaacagccagaacatacacaaaattgaaaggttgaaatcaaaagacgtattggtttatgaacggccagatgaataagaagaaagtgagaaatt |
500 |
Q |
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| T |
34756479 |
gaaggactaacagccagaacatacac--aattgaaaggttgaaatcaaaagacgtattggtttatgaacggccagatgaataagaagaaagtgagaaatt |
34756382 |
T |
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| Q |
501 |
cattcaacaaaatgat |
516 |
Q |
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| T |
34756381 |
cattcaacaaaatgat |
34756366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 449
Target Start/End: Complemental strand, 34755129 - 34755043
Alignment:
| Q |
362 |
tcagacaaaggtaattcattttttgggcacaaagaaaatgaaggactaacagccagaacatacacaaaattgaaaggttgaaatcaaa |
449 |
Q |
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| T |
34755129 |
tcagacaaaagtcattc-ttttgtgggcacaaagaaaatgaaggcccaacaactggaacatacacaagattgaaaagttgaaatcaaa |
34755043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 34755771 - 34755673
Alignment:
| Q |
107 |
aacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatttccat |
205 |
Q |
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||||||||||| ||||||||||||| |||| ||| ||||| ||| |||| | ||||| |||||||||| || ||| ||||||| ||||| |||||| |
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| T |
34755771 |
aacactttcttctgagatgtaaacagttgcaacagtagcaaacaaaggctattttgagtgctttcttcctattctacaagaaaaacagtgcagttccat |
34755673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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