View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14435_high_9 (Length: 519)
Name: NF14435_high_9
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14435_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 4570536 - 4570350
Alignment:
| Q |
17 |
tctcactgttgggaccagaaattaagacaataagaaatttgtacggtacttaactacaacatgagnnnnnnnccctggtatatttaggtttggatctgga |
116 |
Q |
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| T |
4570536 |
tctcactgttgggaccagaaattaagacagtaagaaatttgtacggtacttaactacggcatgagtttttttcc-tagtatatttaggtttggatctgaa |
4570438 |
T |
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| Q |
117 |
acaacagttaactacagtagaccagcaaacagtagttaacttctgttgagggtaaaaatgtcatttttgaatgtataagagcaaatgg |
204 |
Q |
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| T |
4570437 |
acgatagttaactaccgtagaccgggaaacagtagttaacttctgtagagggtaaaaatgtcatttttgaatgtataagagcaaatgg |
4570350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 264 - 509
Target Start/End: Complemental strand, 4570346 - 4570101
Alignment:
| Q |
264 |
atcatattggaataagaccaactac------gagattggacatctcagattcacccaaaaccttaagatattgaatgtcaacttattcgtacttaaaggt |
357 |
Q |
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| T |
4570346 |
atcatattggaataagaccaattacactagtgagattggacatctcagattcacccaaaaccttaagatattgaacgtcaacttattcgtacttaaaggt |
4570247 |
T |
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| Q |
358 |
tggatcatcatattgatacttgaaggtcagctatatcgaattcaccatcgtaccgtggaataagagagacatc-------annnnnnnnngaataaagag |
450 |
Q |
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| T |
4570246 |
tggatcatcatattgatacttgaa-------------gaattcaccattgtaccgtggaataagagagacatcattttttattttatttttaataaagag |
4570160 |
T |
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| Q |
451 |
agacatcatttgaaatccatttgttataccaaaccggaatagatgcaccatcacctatg |
509 |
Q |
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| T |
4570159 |
agacatcatttaaaatccatttgttataccaaactggaatagatgcatcatcacctatg |
4570101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 486
Target Start/End: Complemental strand, 8782500 - 8782467
Alignment:
| Q |
453 |
acatcatttgaaatccatttgttataccaaaccg |
486 |
Q |
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| T |
8782500 |
acatcatttgcaatccatttgttataccaaaccg |
8782467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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