View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14435_low_10 (Length: 600)

Name: NF14435_low_10
Description: NF14435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14435_low_10
NF14435_low_10
[»] chr8 (5 HSPs)
chr8 (18-265)||(12886599-12886859)
chr8 (429-592)||(12887007-12887170)
chr8 (445-498)||(5014833-5014886)
chr8 (73-142)||(12899524-12899593)
chr8 (446-498)||(5005708-5005760)
[»] chr2 (2 HSPs)
chr2 (446-580)||(31620525-31620659)
chr2 (512-592)||(36666266-36666348)
[»] chr1 (2 HSPs)
chr1 (446-580)||(36575464-36575598)
chr1 (446-498)||(26529508-26529560)
[»] chr4 (3 HSPs)
chr4 (450-592)||(23545264-23545406)
chr4 (446-498)||(41774644-41774696)
chr4 (449-498)||(8480957-8481006)
[»] chr3 (1 HSPs)
chr3 (512-592)||(11137976-11138058)
[»] chr7 (1 HSPs)
chr7 (446-569)||(45296016-45296139)
[»] scaffold0115 (2 HSPs)
scaffold0115 (446-528)||(6061-6141)
scaffold0115 (446-528)||(13801-13881)
[»] chr6 (1 HSPs)
chr6 (446-569)||(9448704-9448827)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 7e-97; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 12886599 - 12886859
Alignment:
Q  18 gtagcctccggtacaaacaatagcgtcaatggaggaggcatggtgaggattgagggataagaattggtggagaggaggaagagaagtagggtttaagata 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12886599 gtagcctccggtacaaacaatagcggcaatggaggaggcatggtgaggattgagggataagaattggtggagaggaggaagagaagaagggtttaagata 12886698  T
Q  118 tggaaattgtgagaaggattgggttggatgatgaaggagaattcaggtggaccatgaaggaatagttttgggagattattatt------------ttcta 205  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||            |||||    
T  12886699 tggaaattatgagaaggattgggttgaaggatgaaggagaattcaggtggaccatgaaggaatacttttgggagattattattttcttgagattcttcta 12886798  T
Q  206 tgctttggtttagatctgccata-ttgctttgttaggttgggttgagttggatagttgttg 265  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  12886799 tgctttcgtttagatctgccatatttgctttgttaggttgggttgagttggatggttgttg 12886859  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 429 - 592
Target Start/End: Original strand, 12887007 - 12887170
Alignment:
Q  429 gagcaaacttatttgttgagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaa--c 526  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |  || ||| |||||  |||||  | ||||||||||||||  |    
T  12887007 gagcaaacttatttattgagtaaactctcatttgaaaccctgaaagtgtacttcgcaaatagtcacatccat--ggattaggaaaacgaaccaaaaattc 12887104  T
Q  527 tctcaatgtctatttcgttagtcatacatatccaaaacgctaaacttctattaactctgatgatgt 592  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  12887105 tctcaatgtctatttcgttagtcatacatatccaaaacattaaacttctattaactttgatgatgt 12887170  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 5014886 - 5014833
Alignment:
Q  445 tgagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtcc 498  Q
    ||||||||| |||||||| | || |||||||||||||||||| || ||||||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtcc 5014833  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 12899524 - 12899593
Alignment:
Q  73 gataagaattggtggagaggaggaagagaagtagggtttaagatatggaaattgtgagaaggattgggtt 142  Q
    |||| ||||||||||||||  ||||| ||||  ||||||| ||||||||| |||||| |||| |||||||    
T  12899524 gatatgaattggtggagagagggaagggaagatgggtttatgatatggaagttgtgataaggtttgggtt 12899593  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 5005708 - 5005760
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtcc 498  Q
    |||||||| |||||||| | || |||||||||||||||||| || ||||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtcc 5005760  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 446 - 580
Target Start/End: Original strand, 31620525 - 31620659
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaactc--tcaatgtctatttcg 543  Q
    |||||||| |||||||||| || |||||||||||||||||| |||  |||||| |  | ||  || |||||||||||||||||  ||||||||| || ||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtcctt--gaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccg 31620622  T
Q  544 ttagtcatacatatccaaaacgctaaacttctattaa 580  Q
    |||||||||||  ||||||||| ||||||||||||||    
T  31620623 ttagtcatacaagtccaaaacgttaaacttctattaa 31620659  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 592
Target Start/End: Original strand, 36666266 - 36666348
Alignment:
Q  512 aaacgaaccaaaaact--ctcaatgtctatttcgttagtcatacatatccaaaacgctaaacttctattaactctgatgatgt 592  Q
    |||||||| |||||||  |||||||||| || |||||||||||||  | ||||||| ||||||||| |||| ||| |||||||    
T  36666266 aaacgaactaaaaacttcctcaatgtctgttccgttagtcatacacgttcaaaacgttaaacttctgttaaatctaatgatgt 36666348  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 446 - 580
Target Start/End: Complemental strand, 36575598 - 36575464
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaact--ctcaatgtctatttcg 543  Q
    |||||||| |||||||||| || |||||||||||||||||| ||| ||||||| ||   ||  || ||||||||||||||||  |||||||||| || ||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaa--atcaagaaaacgaaccaaaaacttcctcaatgtctgttccg 36575501  T
Q  544 ttagtcatacatatccaaaacgctaaacttctattaa 580  Q
    |||||||||||  ||||||||| ||||||||| ||||    
T  36575500 ttagtcatacaagtccaaaacgttaaacttctgttaa 36575464  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 26529508 - 26529560
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtcc 498  Q
    |||||||| |||||||| | || |||||||||||||||||| ||| |||||||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtcc 26529560  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 592
Target Start/End: Complemental strand, 23545406 - 23545264
Alignment:
Q  450 aaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaactc--tcaatgtctatttcgttag 547  Q
    |||| |||||||||| |||||||||||||||| |||| ||| ||||||  | || ||  || |||||||||||||||||  ||||||||| |||| ||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtc--tctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtttcattag 23545309  T
Q  548 tcatacatatccaaaacgctaaacttctattaactctgatgatgt 592  Q
    |||||||  ||||||||  ||||||| | |||||||| |||||||    
T  23545308 tcatacacgtccaaaacattaaacttttgttaactctaatgatgt 23545264  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 41774644 - 41774696
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtcc 498  Q
    ||||||||||||||||| | || |||||||||||||||||| || ||||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtcc 41774696  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 8481006 - 8480957
Alignment:
Q  449 taaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtcc 498  Q
    |||||||||||||||| || |||||||||| ||||||| ||| |||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtcc 8480957  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 512 - 592
Target Start/End: Original strand, 11137976 - 11138058
Alignment:
Q  512 aaacgaaccaaaaactc--tcaatgtctatttcgttagtcatacatatccaaaacgctaaacttctattaactctgatgatgt 592  Q
    |||||||||||||||||  ||||||||| |||| ||||| |||||  ||||||||| |||||||||||||||||| |||||||    
T  11137976 aaacgaaccaaaaactccctcaatgtctgtttctttagttatacacgtccaaaacgttaaacttctattaactctaatgatgt 11138058  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 569
Target Start/End: Complemental strand, 45296139 - 45296016
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaact--ctcaatgtctatttcg 543  Q
    |||||||| |||||||| | || | |||||||||||||||| ||| ||| |||  ||||||  ||||| |||||||||||||  ||||| |||| || ||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatcc--atggatcaaggaatcgaaccaaaaactccctcaaagtctcttccg 45296042  T
Q  544 ttagtcatacatatccaaaacgctaa 569  Q
    |||||||| || ||||||||||||||    
T  45296041 ttagtcattcacatccaaaacgctaa 45296016  T

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Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 528
Target Start/End: Complemental strand, 6141 - 6061
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaactc 528  Q
    |||||||| |||||||||| || |||||||||||||||||| ||||| ||||| ||  |||| | |||||| |||||||||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtcccta--gattaatgaaacgcaccaaaaactc 6061  T

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Target: scaffold0115; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 528
Target Start/End: Complemental strand, 13881 - 13801
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaactc 528  Q
    |||||||| |||||||||| || |||||||||||||||||| ||||| ||||| ||  |||| | |||||| |||||||||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtcccta--gattaatgaaacgcaccaaaaactc 13801  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 569
Target Start/End: Complemental strand, 9448827 - 9448704
Alignment:
Q  446 gagtaaactctcatttgagaccttgaaagtgtacctcgctagcagccacgtccatatggattcaggaaacgaaccaaaaact--ctcaatgtctatttcg 543  Q
    |||||||| |||||||| | || |||||||||||||||||| ||| ||| |||   |||||  ||||| |||||||||||||  ||||| |||| || |     
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatcc--ctggatcaaggaatcgaaccaaaaactccctcaaagtctcttcct 9448730  T
Q  544 ttagtcatacatatccaaaacgctaa 569  Q
    |||||||| || ||||||||||||||    
T  9448729 ttagtcattcacatccaaaacgctaa 9448704  T

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